Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_J16
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    27   4.2  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   4.2  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   7.4  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   9.7  

>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 291 YLASTT*KFHWHFS*RNIVMLRPGVLCGRWLQL 389
           Y+A+ +  F+ HF+ +N      G+   RW+QL
Sbjct: 204 YMATVSPIFYTHFTSKNYSFFSEGLWFTRWMQL 236


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 638  SLALVEVCLQYGHPDTKNT 582
            SLAL+   L YGHPD  NT
Sbjct: 1153 SLALIGGKLHYGHPDFLNT 1171


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
 Frame = -1

Query: 715 HCSESPRDGTSECYRVT---AVAHT---QLSIRWHLWR--FVYNTDIPTL 590
           HC+    D + ECY +T    + HT    +  R  + R  F+ NT++PT+
Sbjct: 356 HCNPDLYDSSDECYILTFSLMILHTDFFNIHNRQKMTRAEFISNTNLPTI 405


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 632  ALVEVCLQYGHPDTKNTSCRDANCSPS 552
            +L+     Y +PD KNTS  D + S S
Sbjct: 966  SLLHTSKSYSNPDDKNTSTSDEDTSES 992


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,224,364
Number of Sequences: 5004
Number of extensions: 67296
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)