Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_J09
(855 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 33 0.039
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 32 0.12
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.16
SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc... 31 0.16
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 31 0.21
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 30 0.36
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 30 0.36
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 30 0.48
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 28 1.5
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 28 1.5
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 27 2.6
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce... 27 3.4
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 27 4.5
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 4.5
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar... 26 5.9
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 26 5.9
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ... 26 5.9
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 7.8
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 26 7.8
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 26 7.8
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 26 7.8
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 33.5 bits (73), Expect = 0.039
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Frame = +3
Query: 249 PSDMGRK------MQRKKLKNRVAAQTSRDRRKAKMDEMESQIRDFKEMNERLTSEVESL 410
P +GRK ++K +NR A + R R++ + +E+Q+ KE++ T E + L
Sbjct: 66 PKKIGRKNSDQEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQL 125
Query: 411 KALNERLISENTALREAA 464
+ +L E L++ +
Sbjct: 126 RQKVRQLEEELRILKDGS 143
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 31.9 bits (69), Expect = 0.12
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 288 KNRVAAQTSRDRRKAKMDEMESQIRDFKEMNERLTSEVESLKALNERLISENTALREA 461
KN A + + + K+ E + FK+ L EVE+LK E+ ++NT L A
Sbjct: 1359 KNCEALEKEKQELETKLQETAKETDTFKQQVNSLNEEVENLKKEVEQANTKNTRLAAA 1416
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 31.5 bits (68), Expect = 0.16
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +3
Query: 255 DMGRKMQRKKLKNRVAAQTSRDRRKAKMDEMESQIRDFKEMNERLTSEVESLK 413
D K + KN TSR + DE+E Q++ ++NE+ +++ LK
Sbjct: 119 DKAAKPDGEIKKNVETEVTSRSTSSQEKDELEKQVKTLHDLNEQKDKKIKELK 171
>SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 209
Score = 31.5 bits (68), Expect = 0.16
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 261 GRKMQRKKLKNRVAAQTSRDRRKAKMDEMESQIRDFKEMNERLTSEVESLKALNERLISE 440
G K K +NR AAQ R ++K + ++ Q+ + N+ L ++S L E +I
Sbjct: 121 GTKQSMLKARNRQAAQKCRIKKKKYLQTLQDQVNYYTSENKEL---LQSANDLREEIIKL 177
Query: 441 NT 446
T
Sbjct: 178 RT 179
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 31.1 bits (67), Expect = 0.21
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +3
Query: 288 KNRVAAQTSRDRRKAKMDEMESQIRDFKEMNERLTSEVESLKALNERLISENTAL 452
+NR AA R R+K + +++++ + NE L+++V AL E ++S T L
Sbjct: 481 RNRQAALKCRQRKKQWLSNLQAKVEFYGNENEILSAQV---SALREEIVSLKTLL 532
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 30.3 bits (65), Expect = 0.36
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +3
Query: 339 DEMESQIRDFKEM---NERLTSEVESLKALNERLISENTALREAA 464
D + QIR +KE+ ++ + ++ L+ NERL+SEN LR A
Sbjct: 12 DLKKKQIRQYKEIIRISKAQSIRIKELQLENERLLSENIDLRTTA 56
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 30.3 bits (65), Expect = 0.36
Identities = 29/150 (19%), Positives = 55/150 (36%)
Frame = +3
Query: 201 DSRCSVTVSVQETATGPSDMGRKMQRKKLKNRVAAQTSRDRRKAKMDEMESQIRDFKEMN 380
DS + ++++ SD + K + + S D + + ES+ +
Sbjct: 242 DSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDS 301
Query: 381 ERLTSEVESLKALNERLISENTALREAAAAQSVPGGQGPAESTPQQKEXXXXXXXXXXXX 560
+S+ +S + + + +T +AQS EST + E
Sbjct: 302 TSSSSDSDSSSSSEDGNSNTDTTTSGEVSAQSSTNSTSSEESTSVKDEDSSKIHDKSLKR 361
Query: 561 XXXXXXSQTSSRNSIPRNTSTPYMNLQTPS 650
S TS+++S R T TP+ + PS
Sbjct: 362 KHEDDESSTSTKSS--RTTKTPFTRVGDPS 389
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 29.9 bits (64), Expect = 0.48
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Frame = +3
Query: 237 TATGPSDMG-RKMQRKKLKNRVAAQTSRDRRKAKMDEMESQIRDFKEMNERLTSEVESLK 413
T G S +G K R+K + + RDR A D S E +T E
Sbjct: 730 TDFGLSRVGYMKRHRRKQSSSIPVLDLRDRSSAISDLSLSTASSVLEAQSLITPERPKRP 789
Query: 414 ALNERLIS-ENTALREAAAAQSVPGGQGPAESTP 512
+LNE+L+S + T++R A QS + AE +P
Sbjct: 790 SLNEKLLSLDGTSIR--LAGQSF-NYENSAEDSP 820
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 404 ELESFEREVD*REHSATRSGGGAERPGW 487
ELE+FE+E+ E S T++ G +++P +
Sbjct: 341 ELENFEKEIFKAEVSETKNNGNSDKPSF 368
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 348 ESQIRDFKEMNERLTSEVESLKALNERLISENTALREAAAAQSV 479
++ + + K N+ LTS++ +L+ L ENT L EA + V
Sbjct: 456 QNNLEELKNQNDYLTSQITNLEEGMVMLNKENTKLSEALSNHRV 499
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 27.5 bits (58), Expect = 2.6
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +3
Query: 252 SDMGRKMQRKKLKNRVAAQTSRDRRKA--KMDEMESQIRDFKEMNERLTSEVESLKALNE 425
S+ +K ++K +N A + R RK K ++ S + + N+ + + A +
Sbjct: 174 SEKDKKKKKKSKENDDAPKKDRKTRKKEEKARKLASMLESENKDNDANAAPLNKTDAFKD 233
Query: 426 RLISENTALREAAAAQSVPGGQGPAE 503
L S A+ + P G PA+
Sbjct: 234 GLPSGRLIFAYASGQKVAPDGSNPAD 259
>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 218
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/66 (19%), Positives = 33/66 (50%)
Frame = +3
Query: 285 LKNRVAAQTSRDRRKAKMDEMESQIRDFKEMNERLTSEVESLKALNERLISENTALREAA 464
++ + Q ++ ++ +E++S +DF E+++ + L L + S+N EA
Sbjct: 132 MEKQFVLQKKKNELQSSTEEIDSTEKDFDELHKVILKVERELHTLRQNTPSQNEQ-AEAT 190
Query: 465 AAQSVP 482
++ +P
Sbjct: 191 PSKEIP 196
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 351 SQIRDFKEMNERLTSEVESLKALNERLISENTALRE 458
S+ + F+++ RL K + ERL++EN +E
Sbjct: 411 SEYQGFQKLAARLNCSYADAKRIEERLVNENIIYKE 446
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 4.5
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = -1
Query: 747 VGPTTSSPLGHSPAFLVSTC*VVPAAPASISWRREFASSCKVSMYSSESNCARRSAIGDT 568
V TTSS SP+ +T P++ +S S +SS S SS S+ + S+ +
Sbjct: 132 VSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 191
Query: 567 S 565
S
Sbjct: 192 S 192
>SPAC21E11.03c |pcr1|mts2|transcription factor
Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 171
Score = 26.2 bits (55), Expect = 5.9
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +3
Query: 267 KMQRKKLKNRVAAQTSRDRRKAKMDEMESQIRDFKEMNERLTSEVESLKALNERLISE 440
K +R +NR+AA R ++K + E+E E ++RL + L+ RL S+
Sbjct: 12 KRRRILERNRIAASKFRQKKKEWIKELEQTANAAFEQSKRLQLLLSQLQQEAFRLKSQ 69
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 26.2 bits (55), Expect = 5.9
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 224 LRPGNGDWTI*HGKKNAKKETEKSRGSTDFSRQKESQDGRNGES 355
L G +T G KN+ + SR S+D +K S+D R+ +S
Sbjct: 20 LNSGGSSFT--RGLKNSTLSSTSSRKSSDEKSRKSSEDKRSPQS 61
>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 512
Score = 26.2 bits (55), Expect = 5.9
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Frame = +3
Query: 588 SSRNSIPRNTSTPYMNL----QTPSSKKLMQVLQERLN 689
SS NSIP TST Y+++ TPS VL E LN
Sbjct: 2 SSVNSIPTATSTVYISVLPATATPSGGSGGNVLHEDLN 39
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 7.8
Identities = 22/106 (20%), Positives = 48/106 (45%)
Frame = +3
Query: 207 RCSVTVSVQETATGPSDMGRKMQRKKLKNRVAAQTSRDRRKAKMDEMESQIRDFKEMNER 386
+ SV SV+ETA+ + + + KK+ A + ++ K + +S K+ +R
Sbjct: 6 KTSVKKSVKETASKKGAIEKPSKSKKITKEAAKEIAKQSSKTDVSPKKS-----KKEAKR 60
Query: 387 LTSEVESLKALNERLISENTALREAAAAQSVPGGQGPAESTPQQKE 524
+S S K++ ++ S+ E+++ +ES+ + E
Sbjct: 61 ASSPEPSKKSVKKQKKSKKK--EESSSESESESSSSESESSSSESE 104
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 292 IAWQHRLLATEGKPRW 339
I WQHR L G+ RW
Sbjct: 236 IYWQHRQLGKAGRSRW 251
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = -2
Query: 425 LVQSFQ--ALHLTCETLIHFFEIPYLTLHF-VHLGFPS 321
L+QS L+ CE + ++EIP L + F H F S
Sbjct: 716 LIQSLSNGRLYSQCEAMTEYYEIPVLLIEFEQHQSFTS 753
>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -2
Query: 398 LTCETL-IHFFEIPYLTLHFVHLGFPSVARSLC 303
LT E L +HF I L H FPS+ LC
Sbjct: 104 LTLENLNLHFVPIDALESHLSEASFPSLRSVLC 136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,047,364
Number of Sequences: 5004
Number of extensions: 57649
Number of successful extensions: 221
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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