Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_J07
(808 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23518-8|AAO38654.1| 400|Caenorhabditis elegans Nuclear hormone... 29 3.9
U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone... 29 3.9
U23518-6|AAD31548.2| 446|Caenorhabditis elegans Nuclear hormone... 29 3.9
U23518-5|AAO38653.1| 448|Caenorhabditis elegans Nuclear hormone... 29 3.9
U23518-4|ABB88231.1| 450|Caenorhabditis elegans Nuclear hormone... 29 3.9
AF083234-1|AAD03692.1| 400|Caenorhabditis elegans nuclear recep... 29 3.9
AF083233-1|AAD03691.1| 458|Caenorhabditis elegans nuclear recep... 29 3.9
Z82256-6|CAB05117.2| 616|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z78198-3|CAB01569.1| 1010|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 28 6.8
>U23518-8|AAO38654.1| 400|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform b protein.
Length = 400
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 427 EIRCQTEIMTVASNYLSSSTTMFI 356
E+ CQTE+ T++S+ S ST F+
Sbjct: 81 EVECQTEVSTISSHPTSPSTLPFV 104
>U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform c protein.
Length = 440
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 427 EIRCQTEIMTVASNYLSSSTTMFI 356
E+ CQTE+ T++S+ S ST F+
Sbjct: 121 EVECQTEVSTISSHPTSPSTLPFV 144
>U23518-6|AAD31548.2| 446|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform d protein.
Length = 446
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 427 EIRCQTEIMTVASNYLSSSTTMFI 356
E+ CQTE+ T++S+ S ST F+
Sbjct: 127 EVECQTEVSTISSHPTSPSTLPFV 150
>U23518-5|AAO38653.1| 448|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform a protein.
Length = 448
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 427 EIRCQTEIMTVASNYLSSSTTMFI 356
E+ CQTE+ T++S+ S ST F+
Sbjct: 127 EVECQTEVSTISSHPTSPSTLPFV 150
>U23518-4|ABB88231.1| 450|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform e protein.
Length = 450
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 427 EIRCQTEIMTVASNYLSSSTTMFI 356
E+ CQTE+ T++S+ S ST F+
Sbjct: 129 EVECQTEVSTISSHPTSPSTLPFV 152
>AF083234-1|AAD03692.1| 400|Caenorhabditis elegans nuclear receptor
NHR-21b protein.
Length = 400
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 427 EIRCQTEIMTVASNYLSSSTTMFI 356
E+ CQTE+ T++S+ S ST F+
Sbjct: 81 EVECQTEVSTISSHPTSPSTLPFV 104
>AF083233-1|AAD03691.1| 458|Caenorhabditis elegans nuclear receptor
NHR-21a protein.
Length = 458
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 427 EIRCQTEIMTVASNYLSSSTTMFI 356
E+ CQTE+ T++S+ S ST F+
Sbjct: 139 EVECQTEVSTISSHPTSPSTLPFV 162
>Z82256-6|CAB05117.2| 616|Caenorhabditis elegans Hypothetical
protein B0513.5 protein.
Length = 616
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = -1
Query: 613 DEDKFQLGQSGWSVAEVSRDGPADSVL-YRPWRAYE---*TRPAHTKGDLRRKSLELR 452
D+ F LGQ+G+SV + GP + VL Y RA E + A+ + DL K L+ R
Sbjct: 545 DQVSFSLGQAGFSVYKYLPYGPVEEVLPYLSRRALENGSVLKKANKERDLLWKELKRR 602
>Z78198-3|CAB01569.1| 1010|Caenorhabditis elegans Hypothetical
protein F55C5.4 protein.
Length = 1010
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 361 FIRELQALDEPQM*HNEPSQFRCISYYLTLCNCAVGCRL 245
FIR+L A+ E + + PS RCI + L C G +L
Sbjct: 36 FIRKLWAVQEDIIANANPSTLRCIFFAPALLICPEGIKL 74
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 741 QSGKRERINRDACITKQGNALSSKFKKGEILSSNCIMRTR 622
QS IN C TK +FKKGEI+++ C +R +
Sbjct: 423 QSSMFHSINAPVCATK-AMLDQQRFKKGEIVTTQCGIRKK 461
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 741 QSGKRERINRDACITKQGNALSSKFKKGEILSSNCIMRTR 622
QS IN C TK +FKKGEI+++ C +R +
Sbjct: 423 QSSMFHSINAPVCATK-AMLDQQRFKKGEIVTTQCGIRKK 461
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,398,951
Number of Sequences: 27780
Number of extensions: 380134
Number of successful extensions: 792
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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