Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_J06
         (917 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0739 - 27693768-27694305,27694765-27694912,27694987-276951...    29   6.8  
02_02_0524 + 11179224-11179469,11179543-11181465                       28   9.0  
01_04_0132 + 16469922-16470145,16472720-16472793,16473613-164737...    28   9.0  

>04_04_0739 -
           27693768-27694305,27694765-27694912,27694987-27695188,
           27695802-27695864,27695865-27696120,27697811-27697953
          Length = 449

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 145 LYLTLNILSFKLQIRIVFL*VSVAIYSIWYGVCGGTNAFDYVWLLN 8
           LYL L   SF   +  VFL   +A+ + W G+ G      + W LN
Sbjct: 351 LYL-LGAFSFSSIVINVFLLHPLAVLTTWLGIIGALFVMAFPWYLN 395


>02_02_0524 + 11179224-11179469,11179543-11181465
          Length = 722

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -3

Query: 678 RLLHPQLLPPRSLDSTLFSIAHLHQILFRHHHCFQLHFR 562
           R  HP  LPP +  +TL   A + Q L R HH F  H+R
Sbjct: 120 RRAHP--LPPPAASATLLRKAAV-QALERWHHLFGAHYR 155


>01_04_0132 +
           16469922-16470145,16472720-16472793,16473613-16473755,
           16474076-16474187,16475235-16475350,16475448-16475594
          Length = 271

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 16/32 (50%), Positives = 16/32 (50%)
 Frame = +3

Query: 519 MAKVADVDGLAPKAIENEVESSDGVEKGSGGG 614
           MA    V G A  A   EV S DG E G GGG
Sbjct: 1   MATADPVVGRAAAAAYPEVGSGDGGESGGGGG 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,936,724
Number of Sequences: 37544
Number of extensions: 445931
Number of successful extensions: 984
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)