Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_J06
(917 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U67932-1|AAB65772.1| 456|Homo sapiens cAMP phosphodiesterase PD... 34 0.83
L12052-1|AAA35644.2| 482|Homo sapiens cAMP phosphodiesterase PD... 34 0.83
BC126360-1|AAI26361.1| 456|Homo sapiens phosphodiesterase 7A pr... 34 0.83
AF332652-1|AAK57640.1| 424|Homo sapiens cAMP-specific cyclic nu... 34 0.83
AF333072-2|AAL60056.1| 702|Homo sapiens pol protein protein. 31 4.4
AF298588-1|AAK11554.1| 956|Homo sapiens polymerase protein. 31 4.4
AF298587-1|AAK11553.1| 956|Homo sapiens polymerase protein. 31 4.4
AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein pro... 31 4.4
AF080234-1|AAC63294.1| 572|Homo sapiens polymerase protein. 31 4.4
AF074086-7|AAD21097.1| 956|Homo sapiens polymerase protein. 31 4.4
AF074086-3|AAF88167.1| 956|Homo sapiens polymerase protein. 31 4.4
M14123-4|AAA88033.1| 1361|Homo sapiens protein ( Human endogenou... 31 5.9
DQ821442-1|ABG91576.1| 573|Homo sapiens reverse transcriptase p... 31 5.9
AY186778-1|AAO27434.1| 727|Homo sapiens polymerase protein. 31 5.9
AF164613-1|AAD51796.1| 1755|Homo sapiens Gag-Pro-Pol protein pro... 31 5.9
AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein... 31 5.9
AF080232-1|AAC63292.1| 572|Homo sapiens polymerase protein. 31 5.9
AF080231-1|AAC63291.1| 596|Homo sapiens polymerase protein. 31 5.9
>U67932-1|AAB65772.1| 456|Homo sapiens cAMP phosphodiesterase PDE7
protein.
Length = 456
Score = 33.9 bits (74), Expect = 0.83
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 209 KPTYVKRNYYTVNKYRN--VLSHQNWRSPAAILSTHGLF 319
+P +K N+Y Y+N VL + +WRS +L GLF
Sbjct: 235 QPFLIKTNHYLATLYKNTSVLENHHWRSAVGLLRESGLF 273
>L12052-1|AAA35644.2| 482|Homo sapiens cAMP phosphodiesterase PDE7
protein.
Length = 482
Score = 33.9 bits (74), Expect = 0.83
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 209 KPTYVKRNYYTVNKYRN--VLSHQNWRSPAAILSTHGLF 319
+P +K N+Y Y+N VL + +WRS +L GLF
Sbjct: 261 QPFLIKTNHYLATLYKNTSVLENHHWRSAVGLLRESGLF 299
>BC126360-1|AAI26361.1| 456|Homo sapiens phosphodiesterase 7A
protein.
Length = 456
Score = 33.9 bits (74), Expect = 0.83
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 209 KPTYVKRNYYTVNKYRN--VLSHQNWRSPAAILSTHGLF 319
+P +K N+Y Y+N VL + +WRS +L GLF
Sbjct: 235 QPFLIKTNHYLATLYKNTSVLENHHWRSAVGLLRESGLF 273
>AF332652-1|AAK57640.1| 424|Homo sapiens cAMP-specific cyclic
nucleotide phosphodiesterase PDE7A3 protein.
Length = 424
Score = 33.9 bits (74), Expect = 0.83
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 209 KPTYVKRNYYTVNKYRN--VLSHQNWRSPAAILSTHGLF 319
+P +K N+Y Y+N VL + +WRS +L GLF
Sbjct: 261 QPFLIKTNHYLATLYKNTSVLENHHWRSAVGLLRESGLF 299
>AF333072-2|AAL60056.1| 702|Homo sapiens pol protein protein.
Length = 702
Score = 31.5 bits (68), Expect = 4.4
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 191 RKIFYFKPTYVKRNYYTVNKYRNVLSHQNWRSPAAILSTHGLFMVYTTTRGASRRNSIRS 370
RKI K K T+N ++ +L NW P + T+ + +++ RG S NS R
Sbjct: 138 RKIKPQKIEIRKDTLKTLNDFQKLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLNSKRM 197
Query: 371 VT 376
+T
Sbjct: 198 LT 199
>AF298588-1|AAK11554.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 31.5 bits (68), Expect = 4.4
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 191 RKIFYFKPTYVKRNYYTVNKYRNVLSHQNWRSPAAILSTHGLFMVYTTTRGASRRNSIRS 370
RKI K K T+N ++ +L NW P + T+ + +++ RG S NS R
Sbjct: 248 RKIKPQKIEIRKDTLKTLNDFQKLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLNSKRM 307
Query: 371 VT 376
+T
Sbjct: 308 LT 309
>AF298587-1|AAK11553.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 31.5 bits (68), Expect = 4.4
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 191 RKIFYFKPTYVKRNYYTVNKYRNVLSHQNWRSPAAILSTHGLFMVYTTTRGASRRNSIRS 370
RKI K K T+N ++ +L NW P + T+ + +++ RG S NS R
Sbjct: 248 RKIKPQKIEIRKDTLKTLNDFQKLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLNSKRM 307
Query: 371 VT 376
+T
Sbjct: 308 LT 309
>AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1879
Score = 31.5 bits (68), Expect = 4.4
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 191 RKIFYFKPTYVKRNYYTVNKYRNVLSHQNWRSPAAILSTHGLFMVYTTTRGASRRNSIRS 370
RKI K K T+N ++ +L NW P + T+ + +++ RG S NS R
Sbjct: 1171 RKIKPQKIEIRKDTLKTLNDFQKLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLNSKRM 1230
Query: 371 VT 376
+T
Sbjct: 1231 LT 1232
>AF080234-1|AAC63294.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 31.5 bits (68), Expect = 4.4
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 191 RKIFYFKPTYVKRNYYTVNKYRNVLSHQNWRSPAAILSTHGLFMVYTTTRGASRRNSIRS 370
RKI K K T+N ++ +L NW P + T+ + +++ RG S NS R
Sbjct: 231 RKIKPQKIEIRKDTLKTLNDFQKLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLNSKRM 290
Query: 371 VT 376
+T
Sbjct: 291 LT 292
>AF074086-7|AAD21097.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 31.5 bits (68), Expect = 4.4
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 191 RKIFYFKPTYVKRNYYTVNKYRNVLSHQNWRSPAAILSTHGLFMVYTTTRGASRRNSIRS 370
RKI K K T+N ++ +L NW P + T+ + +++ RG S NS R
Sbjct: 248 RKIKPQKIEIRKDTLKTLNDFQKLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLNSKRM 307
Query: 371 VT 376
+T
Sbjct: 308 LT 309
>AF074086-3|AAF88167.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 31.5 bits (68), Expect = 4.4
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 191 RKIFYFKPTYVKRNYYTVNKYRNVLSHQNWRSPAAILSTHGLFMVYTTTRGASRRNSIRS 370
RKI K K T+N ++ +L NW P + T+ + +++ RG S NS R
Sbjct: 248 RKIKPQKIEIRKDTLKTLNDFQKLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLNSKRM 307
Query: 371 VT 376
+T
Sbjct: 308 LT 309
>M14123-4|AAA88033.1| 1361|Homo sapiens protein ( Human endogenous
retrovirus HERV-K10. ).
Length = 1361
Score = 31.1 bits (67), Expect = 5.9
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 191 RKIFYFKPTYVKRNYYTVNKYRNVLSHQNWRSPAAILSTHGLFMVYTTTRGASRRNSIRS 370
RKI K K T+N ++ +L NW P + T+ + +++ RG S NS R
Sbjct: 150 RKIKPQKIEIRKDTLKTLNDFQKLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLNSQRI 209
Query: 371 VT 376
+T
Sbjct: 210 LT 211
>DQ821442-1|ABG91576.1| 573|Homo sapiens reverse transcriptase
protein.
Length = 573
Score = 31.1 bits (67), Expect = 5.9
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 191 RKIFYFKPTYVKRNYYTVNKYRNVLSHQNWRSPAAILSTHGLFMVYTTTRGASRRNSIRS 370
RKI K K T+N ++ +L NW P + T+ + +++ RG S NS R
Sbjct: 248 RKIKPQKIEIRKDTLKTLNDFQKLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLNSQRI 307
Query: 371 VT 376
+T
Sbjct: 308 LT 309
>AY186778-1|AAO27434.1| 727|Homo sapiens polymerase protein.
Length = 727
Score = 31.1 bits (67), Expect = 5.9
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 191 RKIFYFKPTYVKRNYYTVNKYRNVLSHQNWRSPAAILSTHGLFMVYTTTRGASRRNSIRS 370
RKI K K T+N ++ +L NW P + T+ + +++ RG S NS R
Sbjct: 111 RKIKPQKIEIRKDTLKTLNDFQKLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLNSKRI 170
Query: 371 VT 376
+T
Sbjct: 171 LT 172
>AF164613-1|AAD51796.1| 1755|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1755
Score = 31.1 bits (67), Expect = 5.9
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 191 RKIFYFKPTYVKRNYYTVNKYRNVLSHQNWRSPAAILSTHGLFMVYTTTRGASRRNSIRS 370
RKI K K T+N ++ +L NW P + T+ + +++ RG S NS R
Sbjct: 1171 RKIKPQKIEIRKDTLKTLNDFQKLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLNSQRI 1230
Query: 371 VT 376
+T
Sbjct: 1231 LT 1232
>AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein
protein.
Length = 2294
Score = 31.1 bits (67), Expect = 5.9
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 191 RKIFYFKPTYVKRNYYTVNKYRNVLSHQNWRSPAAILSTHGLFMVYTTTRGASRRNSIRS 370
RKI K K T+N ++ +L NW P + T+ + +++ RG S NS R
Sbjct: 1171 RKIKPQKIEIRKDTLKTLNDFQKLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLNSKRI 1230
Query: 371 VT 376
+T
Sbjct: 1231 LT 1232
>AF080232-1|AAC63292.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 31.1 bits (67), Expect = 5.9
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 191 RKIFYFKPTYVKRNYYTVNKYRNVLSHQNWRSPAAILSTHGLFMVYTTTRGASRRNSIRS 370
RKI K K T+N ++ +L NW P + T+ + +++ RG S NS R
Sbjct: 231 RKIKPQKIEIRKDTLKTLNDFQKLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLNSKRI 290
Query: 371 VT 376
+T
Sbjct: 291 LT 292
>AF080231-1|AAC63291.1| 596|Homo sapiens polymerase protein.
Length = 596
Score = 31.1 bits (67), Expect = 5.9
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 191 RKIFYFKPTYVKRNYYTVNKYRNVLSHQNWRSPAAILSTHGLFMVYTTTRGASRRNSIRS 370
RKI K K T+N ++ +L NW P + T+ + +++ RG S NS R
Sbjct: 247 RKIKPQKIEIRKDTLKTLNDFQKLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLNSKRI 306
Query: 371 VT 376
+T
Sbjct: 307 LT 308
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,095,498
Number of Sequences: 237096
Number of extensions: 2499278
Number of successful extensions: 4365
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4361
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11936890730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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