Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_J06
         (917 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   5.1  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    22   6.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   9.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   9.0  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 431 LRNAGTVAENHVASHTNIASRCGLSCGGKHH 339
           L N   + +N +ASH N+ +    + G  HH
Sbjct: 387 LANVLDLEDNALASHNNLLNNVYSTPGPHHH 417


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -2

Query: 502 K*FYRTHTKKIRANFILTHSLCKTFVMLELW 410
           K F+  H    R    + H+LC T   +++W
Sbjct: 25  KEFHYNHYLTRRRRIEIAHALCLTERQIKIW 55


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 236 YTVNKYRNVLSHQNWRSPAAI 298
           Y  N   + LSH NW  PA++
Sbjct: 534 YACNVVGSGLSHGNWIYPASM 554


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 271 PELAKSGRNIINSWVVHGVHYYTWCFP 351
           P L++S  + +NS    G  + T C P
Sbjct: 370 PTLSESYSSYVNSMYASGAQFATPCTP 396


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,727
Number of Sequences: 438
Number of extensions: 5243
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)