Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_J04
         (822 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0160 - 20427774-20428217,20428301-20428402,20428503-204285...    32   0.63 
11_01_0674 - 5502275-5502954,5503054-5504746                           31   1.1  
11_01_0673 - 5491694-5493102,5493386-5493995                           30   1.9  
10_03_0010 + 7007694-7007888,7007994-7008059,7008161-7008334,700...    29   3.4  
01_06_0208 - 27540077-27540992,27541310-27541497                       29   4.5  
06_03_1478 - 30420097-30420651                                         29   5.9  
04_03_0229 - 13006869-13007017,13007925-13008089,13008178-130083...    29   5.9  
06_02_0011 - 10569471-10572245                                         28   7.8  

>02_04_0160 -
           20427774-20428217,20428301-20428402,20428503-20428595,
           20428675-20428860,20428966-20429213,20429292-20429412,
           20430674-20430718,20431086-20431138,20431152-20431173
          Length = 437

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 25/94 (26%), Positives = 37/94 (39%)
 Frame = -1

Query: 480 IVPFL*DPTCRTSSSWQAANSPGATTILSNTVCSFVTRLKTAA*SVGDGHSSVCLFRRA* 301
           I  FL    C  +S        G+   LSNT CS V  +     SV    +S    R+  
Sbjct: 6   IAVFLSSVICAVASDMGGDPGGGSELHLSNTTCSKVKMVSQVRPSVNQMETSDDATRQVI 65

Query: 300 VSTESSGAGLHLGKAGSANKRSKGGRSIKTRGLL 199
            +T + G    +G  G+   + + GR +   G L
Sbjct: 66  PNTRNEG---RMGPTGNTGLKRRKGRGLTINGTL 96


>11_01_0674 - 5502275-5502954,5503054-5504746
          Length = 790

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -3

Query: 568 NLIGESLDSLFRWQSFHDDYDISNVLPG 485
           NL+ ESL  ++ WQSF D  D+  VLPG
Sbjct: 155 NLVIESLSDVYLWQSFDDATDL--VLPG 180


>11_01_0673 - 5491694-5493102,5493386-5493995
          Length = 672

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -3

Query: 568 NLIGESLDSLFRWQSFHDDYDISNVLPG 485
           NL+ ESL  ++ WQSF  DY    VLPG
Sbjct: 166 NLVIESLPDVYLWQSF--DYPTELVLPG 191


>10_03_0010 +
           7007694-7007888,7007994-7008059,7008161-7008334,
           7009232-7009306,7009384-7009510,7012280-7012371,
           7012496-7012566,7012683-7012792,7013016-7013053,
           7013825-7013960,7014382-7014456,7014574-7014697,
           7014917-7015013,7015426-7015451,7016180-7016255,
           7016499-7016636,7016735-7016872
          Length = 585

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 227 PPFDLLLAEPAFPRCKPAPDDSVLTQALLKRHTELC-PSPTDQAAVL 364
           PP   +L + +FP   PA D  +L   L +RH   C P P     V+
Sbjct: 17  PPPPFILRQLSFPAAVPALDLDILCCRLSRRHRLACLPQPPSDVLVV 63


>01_06_0208 - 27540077-27540992,27541310-27541497
          Length = 367

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
 Frame = +1

Query: 304 GPSKEAHGAMSVTYRSSSCFEPRHETADSIGQYCCGSRRICSLP--TRRSAASWVLQEGD 477
           GPS EA GA     R +     R   A    Q  CG     + P   RR   SW  ++G 
Sbjct: 65  GPSAEAAGAWGSVVRLARARRRRAGAACPARQQRCGGFATAARPGNPRRGDVSWDARDGA 124

Query: 478 NDGREER 498
              R  R
Sbjct: 125 RAARRRR 131


>06_03_1478 - 30420097-30420651
          Length = 184

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 173 GRGYRVHHDRCRAPFQEKQFILG*R 99
           G+ YR   DRC+APF+ +Q + G R
Sbjct: 103 GKRYRYVCDRCKAPFETRQALGGHR 127


>04_03_0229 -
           13006869-13007017,13007925-13008089,13008178-13008332,
           13010276-13011021
          Length = 404

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 163 YPRPGRDGASTLQQTPSLDASSAL 234
           +PR G DG   L QTPS  A+ AL
Sbjct: 83  FPRRGEDGVHLLSQTPSSPAAWAL 106


>06_02_0011 - 10569471-10572245
          Length = 924

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = +2

Query: 254 PAFPRCKPAPDDSVLTQALLKRHTEL--CPSPTDQAAVLSLVTKLQTVLDNIVVAPGEFA 427
           PAFP  K  P  SVL    L R+     C S +  A++++++  L T L    +      
Sbjct: 227 PAFPPYKHQPATSVLRSNYLDRYKLFVSCNSTSFVASLVTVILLLSTELSKHGIRSKAVI 286

Query: 428 ACQLEEVR-QVGSYKKG 475
            C + ++   VG+Y  G
Sbjct: 287 VCVVADLLCLVGAYAAG 303


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,545,480
Number of Sequences: 37544
Number of extensions: 403422
Number of successful extensions: 1098
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)