Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_J01
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 254 6e-68
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 254 6e-68
06_03_0543 + 21967787-21970261 29 4.3
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 5.7
09_06_0103 + 20873310-20873382,20873530-20873735 29 5.7
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 7.6
04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727 28 7.6
06_01_0497 + 3555919-3557154,3557815-3558143,3558177-3558775,355... 28 10.0
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 28 10.0
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 10.0
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 254 bits (622), Expect = 6e-68
Identities = 120/208 (57%), Positives = 150/208 (72%), Gaps = 1/208 (0%)
Frame = +2
Query: 104 STRKMSPKCLLQPPI-LGQKMLTSXMEAYVYKRRADGTHVINLRRTWEKLVLAARAVVAI 280
S R+ + +L + LG K ME YVYKRR DG ++INL +TWEKL LAAR +VAI
Sbjct: 13 SQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAI 72
Query: 281 ENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 460
ENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 73 ENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPR 132
Query: 461 QDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGV 640
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG
Sbjct: 133 TDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGT 192
Query: 641 LPRDQRWDVVVDLFFYRDLKKVKRMNNK 724
+ +WDV+VDLFFYRD ++ K +
Sbjct: 193 ILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
Score = 31.9 bits (69), Expect = 0.61
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 97 LALNEEDVTKMLAATTHLGAENVNFQ 174
L+ E+D+ MLAA HLG +N +FQ
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQ 37
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 254 bits (622), Expect = 6e-68
Identities = 117/192 (60%), Positives = 145/192 (75%)
Frame = +2
Query: 149 LGQKMLTSXMEAYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQ 328
LG K ME YVYKRR+DG ++INL +TWEKL LAAR +VAIENP D+ V S+RP+GQ
Sbjct: 29 LGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQ 88
Query: 329 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPV 508
RAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP
Sbjct: 89 RAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPT 148
Query: 509 IALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFY 688
IA C+TDSP+R+VDI IP N K +SIG ++WLLAR VL++RG + +WDV+VDLFFY
Sbjct: 149 IAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFY 208
Query: 689 RDLKKVKRMNNK 724
RD ++ K +
Sbjct: 209 RDPEEAKEQEEE 220
Score = 34.7 bits (76), Expect = 0.087
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 64 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQ 174
++A G L+ E+DV MLAA HLG +N +FQ
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQ 37
>06_03_0543 + 21967787-21970261
Length = 824
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +2
Query: 593 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF---FYRDL 697
L W++L RE +LRGV P + ++++ + F YR+L
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHFRRYTYREL 509
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 164 TFSAPRWVVAASILVTSSSLRASTSNP 84
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +1
Query: 343 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 450
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -1
Query: 347 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 192
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
>04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727
Length = 706
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +1
Query: 178 GGLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACCTEVCRAH 357
GG Q+ C + C L+ + +CSG CC++ PR + +T + +++ R
Sbjct: 154 GGTGYQSGC-FSQCRDLSGLVDGSCSGMGCCQT-TIPRGMYYYNVTFDKRFNTSQISRFG 211
Query: 358 RC 363
RC
Sbjct: 212 RC 213
>06_01_0497 + 3555919-3557154,3557815-3558143,3558177-3558775,
3558919-3560393
Length = 1212
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 171 PXWRPMSTNDVLMVPM*STCVVPGKNLFWLLVLS*P 278
P WRP++ L++ S C++ G ++W+ +L P
Sbjct: 1018 PAWRPLADPPYLVLNKTSPCILGG--IYWIAILPSP 1051
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -2
Query: 694 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 578
V + Q NIP LVT TTK + F PPH +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.9 bits (59), Expect = 10.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 208 WYPCDQLASYLGKTCSGCSCCRSHREP 288
++PC +GKT S C + HR P
Sbjct: 615 YHPCQPTVRLMGKTVSVCERSKEHRVP 641
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,808,284
Number of Sequences: 37544
Number of extensions: 554134
Number of successful extensions: 1447
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1447
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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