Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_I21
         (863 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1441 - 27116242-27116354,27116646-27116742,27116841-271170...    36   0.055
12_02_1200 + 26937624-26937674,26937913-26938005,26938582-269387...    35   0.096

>08_02_1441 -
           27116242-27116354,27116646-27116742,27116841-27117058,
           27117279-27117422,27117512-27117608,27117932-27118026,
           27118140-27118231,27118326-27118471,27118565-27118664,
           27118857-27118964,27119040-27119085,27119210-27119345,
           27119847-27120044
          Length = 529

 Score = 35.5 bits (78), Expect = 0.055
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 331 VMXXRKRXRXSVRLENGSXTXXTXPPTIPXTELXPDGXFPXGQI 462
           V+  +K+ + S   +       T PP+IP  EL P G FP G+I
Sbjct: 114 VIAAKKKKKKSKAKKKKGPLQQTDPPSIPVDELFPSGEFPEGEI 157


>12_02_1200 +
           26937624-26937674,26937913-26938005,26938582-26938728,
           26940299-26940379,26940711-26940849,26940977-26941013,
           26941095-26941202,26941434-26941533,26941638-26941783,
           26941862-26941953,26942086-26942180,26942435-26942531,
           26942623-26942766,26942912-26943129,26943213-26943323
          Length = 552

 Score = 34.7 bits (76), Expect = 0.096
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 343 RKRXRXSVRLENGSXTXXTXPPTIPXTELXPDGXFPXGQIXDH 471
           +K+ + S   +       T PP+IP  EL P G FP G+I  +
Sbjct: 174 KKKKKKSKSKKKKGPLQQTDPPSIPIDELFPSGDFPEGEIQQY 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,266,393
Number of Sequences: 37544
Number of extensions: 109720
Number of successful extensions: 91
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)