Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_I18
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    38   0.002
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    37   0.003
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    35   0.018
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    32   0.098
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    31   0.17 
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    30   0.40 
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    29   1.2  
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    29   1.2  
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo...    29   1.2  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    28   1.6  
SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces ...    28   2.1  
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    27   2.8  
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    27   3.7  
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      27   4.9  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    26   6.5  

>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = +3

Query: 657 IFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVKDDKLSRXMAKIEYXPRVXAVQAIPXLX 836
           ++I NLD  +TE    ++FG  G+I S S++   +   R    + Y     A +A+  L 
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322

Query: 837 XXKXXNKRXLV 869
             +   K+  V
Sbjct: 323 DKEYKGKKLYV 333



 Score = 29.9 bits (64), Expect = 0.52
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 657 IFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVKD 758
           +FI NLD  +    L + F   G+I+SC + V +
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE 203



 Score = 29.1 bits (62), Expect = 0.92
 Identities = 16/65 (24%), Positives = 32/65 (49%)
 Frame = +3

Query: 552 ATEQTSDAQSSKHETYGLSLNFLESLNIKLPLLNKIFIGNLDVLVTESXLXEVFGYCGQI 731
           A E  + A+ S+  +   + + + + +   P    +++G LD  VTE+ L E+F   G +
Sbjct: 47  AEEPEAAAEPSESTSTPTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPV 106

Query: 732 VSCSI 746
            S  +
Sbjct: 107 ASIRV 111


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +3

Query: 654 KIFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVKDDKLSRXMAKIEYXPRVXAVQAIPXL 833
           ++++GNL   V    L E  G  G +++C I+   + LS+  A IEY     A  AI  L
Sbjct: 67  RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 126

Query: 834 XXXK 845
              K
Sbjct: 127 SNQK 130


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 34.7 bits (76), Expect = 0.018
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 657 IFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVKDDK-LSRXMAKIEYXPRVXAVQAIPXL 833
           +F+GNLD LV E  L + F   GQ+V    + +D+   S+    + Y     A  AI  +
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160

Query: 834 XXXKXXNK 857
                 NK
Sbjct: 161 NNQFLMNK 168


>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 116

 Score = 32.3 bits (70), Expect = 0.098
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +3

Query: 657 IFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVKDDKLSRXMAKIEYXPRVXAVQAI 824
           + +GNL   VTES L   F   G+I+S ++  K+  + R  A +E+     A +A+
Sbjct: 8   VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAM 63


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 657 IFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVKDD 761
           +F+GNLD   T++ L E FG  GQI    ++  +D
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFED 264


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 657 IFIGNLDVLVTESXLXEVFGYCGQIVS 737
           +F+GNL    TE  L   FG CG I S
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQS 394


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +3

Query: 657 IFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVKDDK--LSRXMAKIEYXPRVXAVQAI 824
           +F+GNL     E  L   FG CG I     IV+D K  L +  A I++   +   +A+
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSI-DYVRIVRDPKTNLGKGFAYIQFKDTMGVDKAL 328


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +3

Query: 657 IFIGNLDVLVTESXLXEVFGYCGQIVSCSII-VKDDKLSRXMAKIEYXPRVXAVQAIPXL 833
           I+IGNLD  + E  +  VF   G+ V  +++  K+   S+  A ++Y  +   V A+  +
Sbjct: 33  IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92

Query: 834 XXXKXXNK 857
              K  ++
Sbjct: 93  TNVKLLDR 100


>SPBC13A2.01c |||nuclear cap-binding complex small
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 651 NKIFIGNLDVLVTESXLXEVFGYCGQI 731
           N +++GNL    TE  +  +F  CG+I
Sbjct: 32  NCVYVGNLSFYTTEEQIYALFSKCGEI 58


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 455 ENSVKPENARLPKSGTASRAIAPVAAANEREHRNGANERR 574
           E+S    N  LPKS  +  A AP+ +++  ++ N    RR
Sbjct: 548 ESSTVQTNKYLPKSSASPPANAPIVSSDVHKNENAGTARR 587


>SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 257

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 651 NKIFIGNLDVLVTESXLXEVFGYCGQIVSCS 743
           N++ + N+   VTE  + + F +CG++ + S
Sbjct: 3   NQVIVTNISPEVTEKQISDFFSFCGKVSNIS 33


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 654 KIFIGNLDVLVTESXLXEVFGYCGQIVSCSII 749
           K+FIG L+   T+  L + F   G+++ C+++
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVM 195


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +3

Query: 651 NKIFIGNLDVLVTESXLXEVFGYCGQIVSCSIIV 752
           N +F+GN+   V+E  + E+F   G + +  +++
Sbjct: 7   NVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVL 40


>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 657 IFIGNLDVLVTESXLXEVFGYCGQIVSCSII 749
           +++GN+D  VT   L   F  CG +   +I+
Sbjct: 57  VYVGNVDYSVTPEELQSHFASCGSVNRVTIL 87


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 657 IFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVK 755
           +FIGNL     E  + E FG  G+I    I+ K
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSK 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,259,585
Number of Sequences: 5004
Number of extensions: 65024
Number of successful extensions: 200
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)