Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_I18
(912 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical pr... 57 2e-08
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 38 0.013
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 38 0.013
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 38 0.013
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 38 0.013
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 38 0.013
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 38 0.013
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 37 0.017
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 37 0.017
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 37 0.017
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 34 0.16
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 34 0.16
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 34 0.16
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 34 0.16
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 34 0.16
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 33 0.28
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 33 0.28
Z74042-2|CAA98528.2| 379|Caenorhabditis elegans Hypothetical pr... 31 0.86
Z99281-3|CAB16508.1| 482|Caenorhabditis elegans Hypothetical pr... 31 1.5
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 31 1.5
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 30 2.6
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z19157-2|CAA79568.1| 826|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 6.1
U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical pr... 29 6.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 6.1
U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical pr... 28 8.1
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 28 8.1
>Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical
protein C25A1.4 protein.
Length = 454
Score = 56.8 bits (131), Expect = 2e-08
Identities = 30/98 (30%), Positives = 51/98 (52%)
Frame = +3
Query: 576 QSSKHETYGLSLNFLESLNIKLPLLNKIFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVK 755
++ ++ +GL++ FL NI+ PL +IFI NL V L EVFG G+I +
Sbjct: 163 RTGTYDLFGLNMEFLRQHNIEPPLCERIFIANLAFNVGTDKLYEVFGMAGKITWMDFRID 222
Query: 756 DDKLSRXMAKIEYXPRVXAVQAIPXLXXXKXXNKRXLV 869
+ S+ + I+Y + AVQA+ L + ++ +V
Sbjct: 223 KEGKSKGVCVIQYTHPIEAVQAVSMLNGQRLFDRNLVV 260
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 37.5 bits (83), Expect = 0.013
Identities = 21/56 (37%), Positives = 27/56 (48%)
Frame = +3
Query: 654 KIFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVKDDKLSRXMAKIEYXPRVXAVQA 821
K+FIG L E L E+F G I CS++ D SR A + + R AV A
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVA 198
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 37.5 bits (83), Expect = 0.013
Identities = 21/56 (37%), Positives = 27/56 (48%)
Frame = +3
Query: 654 KIFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVKDDKLSRXMAKIEYXPRVXAVQA 821
K+FIG L E L E+F G I CS++ D SR A + + R AV A
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVA 198
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 37.5 bits (83), Expect = 0.013
Identities = 21/56 (37%), Positives = 27/56 (48%)
Frame = +3
Query: 654 KIFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVKDDKLSRXMAKIEYXPRVXAVQA 821
K+FIG L E L E+F G I CS++ D SR A + + R AV A
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVA 198
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 37.5 bits (83), Expect = 0.013
Identities = 21/56 (37%), Positives = 27/56 (48%)
Frame = +3
Query: 654 KIFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVKDDKLSRXMAKIEYXPRVXAVQA 821
K+FIG L E L E+F G I CS++ D SR A + + R AV A
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVA 198
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 37.5 bits (83), Expect = 0.013
Identities = 21/56 (37%), Positives = 27/56 (48%)
Frame = +3
Query: 654 KIFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVKDDKLSRXMAKIEYXPRVXAVQA 821
K+FIG L E L E+F G I CS++ D SR A + + R AV A
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVA 198
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 37.5 bits (83), Expect = 0.013
Identities = 21/56 (37%), Positives = 27/56 (48%)
Frame = +3
Query: 654 KIFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVKDDKLSRXMAKIEYXPRVXAVQA 821
K+FIG L E L E+F G I CS++ D SR A + + R AV A
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVA 198
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 37.1 bits (82), Expect = 0.017
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +3
Query: 657 IFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVKDDKLSRXMAKIEYXPRVXAVQAIPXLX 836
IFI NLD ++ + + F G I+SC + + +D S+ + + A AI +
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Query: 837 XXKXXNKRXLV 869
K+ V
Sbjct: 182 GMLLAGKKVFV 192
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 37.1 bits (82), Expect = 0.017
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +3
Query: 657 IFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVKDDKLSRXMAKIEYXPRVXAVQAIPXLX 836
IFI NLD ++ + + F G I+SC + + +D S+ + + A AI +
Sbjct: 59 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 118
Query: 837 XXKXXNKRXLV 869
K+ V
Sbjct: 119 GMLLAGKKVFV 129
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 37.1 bits (82), Expect = 0.017
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +3
Query: 657 IFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVKDDKLSRXMAKIEYXPRVXAVQAIPXLX 836
IFI NLD ++ + + F G I+SC + + +D S+ + + A AI +
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Query: 837 XXKXXNKRXLV 869
K+ V
Sbjct: 182 GMLLAGKKVFV 192
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 33.9 bits (74), Expect = 0.16
Identities = 23/73 (31%), Positives = 34/73 (46%)
Frame = +3
Query: 651 NKIFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVKDDKLSRXMAKIEYXPRVXAVQAIPX 830
NKIFIG L +TE + E+ G + + S+ V S+ A EY QAI
Sbjct: 291 NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAG 350
Query: 831 LXXXKXXNKRXLV 869
L + +K+ +V
Sbjct: 351 LNGMQLGDKQLVV 363
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 33.9 bits (74), Expect = 0.16
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +3
Query: 654 KIFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVKDDKLSRXM 779
K+FIG L E L E+F G I CS++ D SR M
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGM 184
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 33.9 bits (74), Expect = 0.16
Identities = 23/73 (31%), Positives = 34/73 (46%)
Frame = +3
Query: 651 NKIFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVKDDKLSRXMAKIEYXPRVXAVQAIPX 830
NKIFIG L +TE + E+ G + + S+ V S+ A EY QAI
Sbjct: 291 NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAG 350
Query: 831 LXXXKXXNKRXLV 869
L + +K+ +V
Sbjct: 351 LNGMQLGDKQLVV 363
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 33.9 bits (74), Expect = 0.16
Identities = 23/73 (31%), Positives = 34/73 (46%)
Frame = +3
Query: 651 NKIFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVKDDKLSRXMAKIEYXPRVXAVQAIPX 830
NKIFIG L +TE + E+ G + + S+ V S+ A EY QAI
Sbjct: 266 NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAG 325
Query: 831 LXXXKXXNKRXLV 869
L + +K+ +V
Sbjct: 326 LNGMQLGDKQLVV 338
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 33.9 bits (74), Expect = 0.16
Identities = 23/73 (31%), Positives = 34/73 (46%)
Frame = +3
Query: 651 NKIFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVKDDKLSRXMAKIEYXPRVXAVQAIPX 830
NKIFIG L +TE + E+ G + + S+ V S+ A EY QAI
Sbjct: 269 NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAG 328
Query: 831 LXXXKXXNKRXLV 869
L + +K+ +V
Sbjct: 329 LNGMQLGDKQLVV 341
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 33.1 bits (72), Expect = 0.28
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +3
Query: 657 IFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVKDDKLSRXMAKIEYXPRVXAVQAIPXLX 836
IFI NLD ++ + + F G I+SC + D+ S+ + + A AI +
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVN 206
Query: 837 XXKXXNKRXLV 869
+K+ V
Sbjct: 207 GMLLSDKKVYV 217
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 33.1 bits (72), Expect = 0.28
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +3
Query: 657 IFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVKDDKLSRXMAKIEYXPRVXAVQAIPXLX 836
IFI NLD ++ + + F G I+SC + D+ S+ + + A AI +
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVN 206
Query: 837 XXKXXNKRXLV 869
+K+ V
Sbjct: 207 GMLLSDKKVYV 217
>Z74042-2|CAA98528.2| 379|Caenorhabditis elegans Hypothetical
protein T11F9.3 protein.
Length = 379
Score = 31.5 bits (68), Expect = 0.86
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Frame = +3
Query: 156 LYIKPIPKFWNAEKVKSFIQDKCKSRTIPENIKFVLLFIEDNGDPSCLVK---FANSYIC 326
+Y+ K W+A V++ + ++ T+PE F L E + + K F + C
Sbjct: 249 VYVLEAKKEWDASGVRNNYRKGIETNTMPEYTYFALTAPEGSTIEVRITKLSGFFCQHTC 308
Query: 327 NLALMELENVEIDGKRL--FINLDTDNLFNKKRNMNRNIF 440
+ +EL+ + D + + + D DNL+NK R+ N F
Sbjct: 309 DYNGVELK-YKTDRRIVSPLVCCDNDNLWNKTRSSTNNPF 347
>Z99281-3|CAB16508.1| 482|Caenorhabditis elegans Hypothetical
protein Y57G11C.6 protein.
Length = 482
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/83 (24%), Positives = 38/83 (45%)
Frame = +3
Query: 543 ANTATEQTSDAQSSKHETYGLSLNFLESLNIKLPLLNKIFIGNLDVLVTESXLXEVFGYC 722
AN+ Q+ D + + +++ +++PL I+IG + V TE + +
Sbjct: 208 ANSKYNQSEDFPALDSNLLKVEKDYVNISRVEIPLGRNIYIGQVPVKDTEETFWKAV-FD 266
Query: 723 GQIVSCSIIVKDDKLSRXMAKIE 791
+IVS +IV D+ + K E
Sbjct: 267 KRIVSIDVIVGDEPIEFFPKKAE 289
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 657 IFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVKDDKLSRXMAKIEY 794
+FIGN+D T + E F CGQIV +I DK ++ Y
Sbjct: 57 VFIGNVDFNSTIEEIEEHFKGCGQIVKTTI--PKDKFTKKQKNFAY 100
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +3
Query: 657 IFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVKDDKLSRXMAKIEYXPRVXAVQAI 824
+++GNLD VTE + +F G + +I D + A +E+ A QA+
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIF--DGSNDPYAFVEFSDHGQASQAL 101
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 657 IFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVKDDKLS 770
+++GNLD VTE + +F G + +I + K++
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEMKVN 85
>Z19157-2|CAA79568.1| 826|Caenorhabditis elegans Hypothetical
protein ZC84.3 protein.
Length = 826
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 159 IIXLQSITLSLRRRTISFCLDRFLERTGERDRLRPYMTK 43
II T S R+T+ +CL + R GE+ R+ P+ TK
Sbjct: 765 IIKAYQSTSSTVRKTVVYCLVAMVNRVGEQ-RMTPHFTK 802
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 657 IFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVKD 758
IF+GNLD V E L + F G I+ I++D
Sbjct: 102 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRD 135
>U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical
protein C33G8.8 protein.
Length = 346
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = -3
Query: 688 VTKTSRFPMKILFSNGSFMFKDSKKF----KLSPYVSCFELWASLVCSV 554
VTK S+ K+L+ G +F D KF K S + F W + C++
Sbjct: 135 VTKLSKMDSKLLWDLGEVIFSDVSKFNSFDKDSMIANFFPKWIIMECAI 183
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 657 IFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVKD 758
IF+GNLD V E L + F G I+ I++D
Sbjct: 112 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRD 145
>U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical
protein C18A3.5c protein.
Length = 103
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 657 IFIGNLDVLVTESXLXEVFGYCGQIVSCSII 749
+++GNLD VTE + +F G + +I
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVI 78
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = +3
Query: 657 IFIGNLDVLVTESXLXEVFGYCGQIVSCSIIVKDDKLS---RXMAKIEYXPRVXAVQAIP 827
+++GN+D T S + E F CG++ + + DK + + A +E+ ++ +VQ
Sbjct: 48 VYVGNVDWKSTVSEIEEHFAVCGKV--ARVTIPKDKFTGYQKNFAFVEF-QKLESVQLAL 104
Query: 828 XLXXXKXXNKRXLV 869
L N++ +V
Sbjct: 105 VLSGTMFRNRKIMV 118
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,917,892
Number of Sequences: 27780
Number of extensions: 362778
Number of successful extensions: 956
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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