Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_I17
(871 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 29 0.86
SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|... 28 1.5
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 28 1.5
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 28 2.0
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy... 27 2.6
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 27 3.5
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 27 4.6
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug... 26 8.0
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 26 8.0
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 26 8.0
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 29.1 bits (62), Expect = 0.86
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +1
Query: 124 TPKEMGTVGSLXPDFVKQFEGPVMYPDESTKSLKPVPYNSIIKPAEKKVRNM--ILNFGP 297
T E+ L P++ + EG + + +K PVP +S P E N+ F
Sbjct: 20 TDHEIDLEKGLLPEYNSEEEGTLPLYSDISKLANPVPEDSSTGPTEIANPNVERRQEFKD 79
Query: 298 QHPAAHGVLRLVLEL 342
HP + +LRL++ +
Sbjct: 80 SHPNIYFLLRLLISV 94
>SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 28.3 bits (60), Expect = 1.5
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +1
Query: 124 TPKEMGTVGSLXPDFVKQFEGPVMYPDESTKSLKPVPYNSIIKPAEKKVRNM--ILNFGP 297
T E+ L P++ + EG + + +K PVP +S P E N+ F
Sbjct: 20 TDHEIDLEKGLLPEYNSEEEGALPPYSDISKLANPVPEDSSTGPTEIANPNVERRQEFKD 79
Query: 298 QHPAAHGVLRLVLEL 342
HP + +LRL++ +
Sbjct: 80 SHPNIYFLLRLLISV 94
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +3
Query: 558 VCGDTRLLNHIMAVGTHALDVGALTPFFWLFEERXKMMEFYERVSGARMHAAYIRP 725
V GD L NH +A G H D+ +TP F + K + FY G + I P
Sbjct: 808 VPGDVLLSNHPIAGGVHLPDLTVVTPVF----DNNKDIIFYCAARGHMVDVGGITP 859
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 280 SCCVLSFRPVL*CCYKEQVSMIWST 206
SC +L +PV C Y E+++ W T
Sbjct: 289 SCTILKSKPVSLCVYPEKITFNWLT 313
>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 106 PLFIM*TPKEMGTVGSLXPDFVKQFEGPVMY 198
P F + P GTV L PD V++F+ P +Y
Sbjct: 27 PCFFL--PTSRGTVPHLTPDNVEEFDIPALY 55
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 540 QVHQNSVC-GDTRLLNHIMAVGTHALDVGALTPFF 641
++H+ + GD + NH GTH D+ +TP F
Sbjct: 820 KIHEGKLKPGDVLVTNHPSYGGTHLPDITTITPHF 854
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 411 DQFFSTTVQETYVRICCTDCLSVQFQYETQHPVSGWML 298
D+ S TV E+Y +I C + + Q H + GW L
Sbjct: 1901 DKEKSCTVSESYKQIDCDTYEATRLQKLLLHSIGGWPL 1938
>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 212 VDSSGYMTGPSNCFTKS 162
VD+SGY+T PSN +S
Sbjct: 130 VDASGYVTDPSNLIERS 146
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 25.8 bits (54), Expect = 8.0
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +2
Query: 320 CCVSYWNWTER 352
CC+S W+WT R
Sbjct: 157 CCLSNWSWTHR 167
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 411 DQFFSTTVQETYVRICCTDCL 349
D+FF T Q VR C DCL
Sbjct: 414 DRFFPGTFQTGVVRTNCVDCL 434
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,185,777
Number of Sequences: 5004
Number of extensions: 64392
Number of successful extensions: 175
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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