Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_I17
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0217 - 1712979-1713794                                           31   1.6  
05_01_0201 - 1441063-1443836,1444658-1445758,1446367-1447179,144...    29   4.8  
04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,665...    29   6.4  
06_03_1000 - 26778993-26779478                                         28   8.5  

>03_01_0217 - 1712979-1713794
          Length = 271

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
 Frame = -1

Query: 547 CTWPAEEHR-CSAASRRPDCSTARCTSWTRSPDGRSTAGLGC 425
           C+ PA+  R C    R   C T     W   PDG ST    C
Sbjct: 172 CSRPAKRRRKCGEEKRCGHCQTTETPQWRVGPDGPSTLCNAC 213


>05_01_0201 - 1441063-1443836,1444658-1445758,1446367-1447179,
            1447386-1447440
          Length = 1580

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
 Frame = +3

Query: 447  RPSGLRVHDVQRAVLQSGRREAAE----HRCS---SAGQVHQNSVCGDTRLLNHIMA 596
            RPS L + +    VL +GRRE A       CS   SAG   Q    GD +L   I++
Sbjct: 1338 RPSSLGLSNGNLGVLSTGRREEAREGLFRPCSVKTSAGNEEQQKRPGDVKLFGQILS 1394


>04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,
            6653569-6653766,6654485-6654568,6655175-6655920,
            6656480-6657341
          Length = 1194

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
 Frame = +1

Query: 259  EKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQAL 438
            E+ V NM  +    H  AHG +RL +E++   +R     + ++ R     + YK      
Sbjct: 1005 EQHVSNMCKSCS-NHARAHGQVRLAMEMEKMNIRLGKEMVTMICRQIIVPVYYKNLMARS 1063

Query: 439  PYFDRL-DYVSMMCN-EQCYSLAVEKL 513
                 L D  S   N    Y+L +EK+
Sbjct: 1064 AMLTCLTDSESQRANGNALYALTIEKM 1090


>06_03_1000 - 26778993-26779478
          Length = 161

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 358 GLSLRPVPVRDAAPRERLDAGARSSGSCC 272
           G +LRP  V   APR+   AG R +  CC
Sbjct: 83  GSALRPATVCPPAPRKPRPAGKRMTKRCC 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,968,281
Number of Sequences: 37544
Number of extensions: 467790
Number of successful extensions: 1189
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)