Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_I17
         (871 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.4  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 14/52 (26%), Positives = 21/52 (40%)
 Frame = -3

Query: 734 NPXWSDVGGVHPGAADSFVELHHFXSLLKQPEEGSERPHVERVRADRHDVVQ 579
           +P     GG       S    HH  S+  +PE    +P VE  R  + ++ Q
Sbjct: 144 SPQMYSSGGEEITPRQSHQSYHHMDSVEYKPEIMEYKPDVEEQRYKQVEISQ 195


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 235 YNSIIKPAEKKVRNMILNFG 294
           YN +I+P +     + +NFG
Sbjct: 38  YNKLIRPVQNMTEKVHVNFG 57


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 538 PAEEHRCSAASRRPDCSTARC 476
           P ++HR S+AS      T RC
Sbjct: 279 PVKQHRSSSASTTCSGHTVRC 299


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -3

Query: 209 DSSGYMTGPSNCFTKSGXREPTVPISLGVHI-MNSGN 102
           DS G  T  S C      ++  VP++   ++  NSGN
Sbjct: 508 DSLGLSTATSTCSLAVAKQQNQVPLTSSSNVNNNSGN 544


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,960
Number of Sequences: 438
Number of extensions: 4284
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)