Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_I16
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    46   5e-06
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ...    29   0.62 
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       27   2.5  
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           27   2.5  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    27   3.3  

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 22/78 (28%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
 Frame = +1

Query: 442 EHPKFNFVGKLLGPKGNTMKQLQEDTLCEMAVLGRGSMRDRQKEEELRQSLDPKY-SHLA 618
           ++P+ NF+G L+GP+G+T+K ++  +  ++A+ G+GS+++ +         DP    ++ 
Sbjct: 196 DYPEINFIGLLIGPRGHTLKDMEAKSGAKIAIRGKGSVKEGKGRS------DPSVRGNME 249

Query: 619 DDLHVEISAIAPPAEAHA 672
           +DLH  ++A +     HA
Sbjct: 250 EDLHCLVTADSEDKINHA 267


>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 441

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = +1

Query: 214 GEEGIKINEKAGEYMRELLSEKIK----LNNSKFPLSMKLIDQEVTKVQASGRITKDSKY 381
           G+  +  N K G    ELL+EKIK    +N+  +P+  K +  E+ +     R+ + +K 
Sbjct: 74  GQLAVSKNAKLGLQQYELLAEKIKIYGQINDDNYPIQKKHLTTEMLRQIPHLRL-RTAKQ 132

Query: 382 VDVFR 396
            ++FR
Sbjct: 133 GEIFR 137


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 442 EHPKFNFVGKLLGPKGNTMKQLQEDTLCEMAVLGRGSMRDRQ 567
           +HPK  FV    GPK   ++Q++E  + +  V   GS+R  Q
Sbjct: 218 QHPKVRFVIAGDGPKSIDLEQMREKYMLQDRVEMLGSVRHDQ 259


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 344 YRLVVVSPRTQNMWMCSVTNQPKSQLKFLCQLR-NILNSTLWENY*VQKETL 496
           Y   VV+  T    MC  T++ K Q  FLC +R   L  T++  +   KE +
Sbjct: 161 YAKSVVNIETNESHMCIPTDKRKDQTLFLCTIRKEALEKTIFPLHNWTKENV 212


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +1

Query: 454 FNFVGKLLGPKGNTMKQLQEDTLCEMAVLGRGS 552
           F+    ++GP+G  +K +Q++T   + + G+GS
Sbjct: 303 FHLRQAIVGPQGAYVKHIQQETRTRVQIKGQGS 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,984,268
Number of Sequences: 5004
Number of extensions: 56170
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)