Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_I15
(839 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0362 - 2667031-2667090,2667182-2667426,2667749-2669471,266... 31 1.5
02_01_0110 + 819022-819264,819996-820761,820846-820920,821276-82... 30 2.0
08_01_0657 + 5674907-5674993,5675615-5676583 29 6.1
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011... 29 6.1
03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459 29 6.1
08_02_1329 - 26182762-26183007,26183149-26183249,26183533-261836... 28 8.1
04_03_0141 + 11767781-11767880,11767953-11769262 28 8.1
03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177... 28 8.1
02_05_0375 + 28387091-28387597 28 8.1
>07_01_0362 -
2667031-2667090,2667182-2667426,2667749-2669471,
2669578-2669921,2670544-2670667,2671350-2671599,
2672486-2672571
Length = 943
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -3
Query: 564 GVRAALGA*PWCALGAGRERPESPSCAGSDPGRSVAGSRRETRIPLPSQLRANY 403
G+ A G W A G RE E AG+D G+S++ ++ + + + L + +
Sbjct: 388 GISATSGINGWVAEGTERENVEGRGEAGTDEGKSLSNAQVDLNLTMAGGLPSTH 441
>02_01_0110 +
819022-819264,819996-820761,820846-820920,821276-821445,
821644-821742,821835-822134,822211-822318,822443-822514,
822580-822666,822887-822958,823063-823152,823795-823902,
824015-824083,824177-824242,824395-824418
Length = 782
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 408 WPEADWATECVSRAEILRLIYQGRFLHS 491
WPE D E + E +R +Y+GRFL S
Sbjct: 695 WPEVDALMEEMKNIEEVRDVYKGRFLRS 722
>08_01_0657 + 5674907-5674993,5675615-5676583
Length = 351
Score = 28.7 bits (61), Expect = 6.1
Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Frame = +2
Query: 452 DPATDLPGSLPAQLGDSGRSRPAPRAHHG-------HAPSAARTPPGA*LSR 586
+ A + GSL A G G S PRA HG AP R P GA L R
Sbjct: 4 EAARETKGSLAAAFGFLGTSGGEPRASHGEDGLPPVQAPPRRRLPLGAPLHR 55
>06_03_1490 +
30497980-30498102,30499034-30500156,30500914-30501132,
30501228-30501454,30501810-30501884,30502250-30502321,
30502765-30502863,30502975-30503046,30503131-30503245,
30503455-30503523,30503625-30503952,30504320-30504437,
30504522-30505448
Length = 1188
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +2
Query: 509 SRPAPRAHHGHAPSAARTPPGA*LSRSTTEK*RWFKQ 619
SR P HHG PS+ + PP LS + R KQ
Sbjct: 492 SRAMPGQHHGMPPSSMKPPPQRPLSLDADDAVRTEKQ 528
>03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459
Length = 341
Score = 28.7 bits (61), Expect = 6.1
Identities = 23/63 (36%), Positives = 29/63 (46%)
Frame = +1
Query: 334 PERRKSSSSVPSTRPATSHCTSTIIGPKLTGQRNACLAPRSCD*STRVASCTAR*LWALS 513
PE+R V +PA S C S IIG G R PR+ + +SC A L +
Sbjct: 80 PEKRPRYQDVDEEQPAASEC-SEIIG----GAR-----PRAAEVEVSESSCLASVLESYL 129
Query: 514 ACP 522
ACP
Sbjct: 130 ACP 132
>08_02_1329 -
26182762-26183007,26183149-26183249,26183533-26183602,
26183692-26183895,26186435-26186941,26188672-26188677
Length = 377
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +2
Query: 431 GMRVSRRDPATDLPGSLPAQLGDSGRSR--PAPRAHHGHAPSAARTPP 568
G + DP D P + + + SR P P +HH APS A PP
Sbjct: 41 GKMFNPNDPV-DNPEAFSSSIAAPSPSRAPPPPPSHHERAPSDAPPPP 87
>04_03_0141 + 11767781-11767880,11767953-11769262
Length = 469
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 488 QLGDSGRSRPAPRAHHGHAPSAARTPP 568
QLG R AP +H G + S+AR PP
Sbjct: 331 QLGAPHAPRAAPSSHPGASSSSARPPP 357
>03_01_0224 -
1771582-1771727,1771855-1771980,1772489-1772517,
1772689-1772747,1772816-1772929,1773030-1773238,
1773347-1774087,1775678-1776238,1776295-1776419,
1778187-1778317,1779020-1779178,1779471-1779728,
1780140-1780164,1780531-1780592,1780944-1781003,
1781112-1781219,1781703-1781838,1781880-1781929,
1782024-1782096,1782209-1782345,1782441-1782527,
1782624-1782721,1783259-1783369,1783685-1783769,
1783880-1783969
Length = 1259
Score = 28.3 bits (60), Expect = 8.1
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +3
Query: 426 ATECVSRAEILRLIYQGRFLHSSVTLGALGLPLGRTTVMHLVPREHLPEPNS 581
A C A RLIY+GR L TL + G+ T +H+V R P P S
Sbjct: 757 AESCDVPAPQQRLIYKGRILKDEQTLASYGVETDHT--IHMV-RGAAPPPAS 805
>02_05_0375 + 28387091-28387597
Length = 168
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 497 DSGRSRPAPRAHHGHAPSAARTPPGA*LSRSTTEK*RW 610
D GR RP H PS + TP A LS T + W
Sbjct: 75 DDGRERPMGERGHPALPSRSSTPRAARLSPPCTVRHLW 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,385,267
Number of Sequences: 37544
Number of extensions: 453925
Number of successful extensions: 1552
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1551
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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