Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_I14
(881 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 60 5e-10
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 51 3e-07
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 50 6e-07
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 44 3e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 43 5e-05
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 41 2e-04
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 41 2e-04
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 40 5e-04
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 38 0.003
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 37 0.004
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.006
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 36 0.006
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 36 0.006
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 36 0.010
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 34 0.023
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 34 0.023
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 33 0.041
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 33 0.071
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 32 0.12
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 30 0.38
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 30 0.38
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 30 0.38
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 29 0.66
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 29 1.2
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 29 1.2
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 28 1.5
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 28 2.0
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 27 2.7
SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit S14|... 27 3.5
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 27 3.5
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 4.7
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 27 4.7
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 26 6.2
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 26 6.2
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 26 6.2
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 26 8.2
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 26 8.2
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 59.7 bits (138), Expect = 5e-10
Identities = 28/71 (39%), Positives = 44/71 (61%)
Frame = +3
Query: 429 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMKH 608
I + LT NVT++HI EIF YG + I P+ + N +GY Y+E+ D+A NA+
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELN-KGYCYIEYVYHDQAANAVDK 159
Query: 609 MDGGQIDGQEI 641
M+ ++DG+E+
Sbjct: 160 MNNAELDGEEL 170
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 50.8 bits (116), Expect = 3e-07
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Frame = +3
Query: 426 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHN---GRGYAYVEFNNADEAEN 596
R+ +GRL+ + + I +F T GTV+ + P R+ G A+V FNN ++ +
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 597 AMKHMDGGQIDGQEI 641
A++ ++G +D +EI
Sbjct: 105 AIETLNGKTLDDREI 119
Score = 35.1 bits (77), Expect = 0.013
Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 13/128 (10%)
Frame = +3
Query: 282 EKIRDRSPTGEKKKSVLPLSNDKAKIKEKQXXXXXXXXXXXXXXXXX--TRIHIGRLTLN 455
E + S E + P SN+ + +KQ I++ L++
Sbjct: 156 ESAKGSSDENEANTATAPSSNEANGVDKKQNEIKGKGGSGKNKAKPLPPNSIYVSGLSVT 215
Query: 456 VTRDHIHEIFSTYG------TVKSIE-FPMDRL----HPHNGRGYAYVEFNNADEAENAM 602
+T + + E+F Y V+S+ + + R+ GRG+ +V F NA++ A+
Sbjct: 216 LTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSFANAEDQSRAI 275
Query: 603 KHMDGGQI 626
+ M+G Q+
Sbjct: 276 EEMNGKQV 283
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 49.6 bits (113), Expect = 6e-07
Identities = 20/76 (26%), Positives = 42/76 (55%)
Frame = +3
Query: 426 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMK 605
R+ + LT + D + +F +G ++ + P+D+ +N +G+AY++F++AD+A A
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDK-KTNNPKGFAYIDFHDADDAVRAYL 382
Query: 606 HMDGGQIDGQEITAAP 653
+D G+ + P
Sbjct: 383 ELDAKPFQGRLLHVLP 398
Score = 43.2 bits (97), Expect = 5e-05
Identities = 21/73 (28%), Positives = 37/73 (50%)
Frame = +3
Query: 423 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAM 602
T+I I L T+ + + YG ++S+ P + + RG+A+ EF A EA NAM
Sbjct: 721 TKILIKNLPFEATKKDVQSLLGAYGQLRSVRVP--KKFDRSARGFAFAEFVTAREAANAM 778
Query: 603 KHMDGGQIDGQEI 641
+ + + G+ +
Sbjct: 779 RALKNTHLLGRHL 791
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 552 GYAYVEFNNADEAENAMKHMDGGQIDGQEI 641
G+ +VEF + A AM M+G +DG ++
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKL 695
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 44.0 bits (99), Expect = 3e-05
Identities = 23/86 (26%), Positives = 43/86 (50%)
Frame = +3
Query: 426 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMK 605
+I+I L LN+ D + E+ +G + S + + + + +G+ + EF N +AE A+
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQL-IKNIADGSSKGFCFCEFKNPSDAEVAIS 369
Query: 606 HMDGGQIDGQEITAAPVLVPVTTAQI 683
+DG G ++ A V + A I
Sbjct: 370 GLDGKDTYGNKLHAQFACVGLNQAMI 395
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 43.2 bits (97), Expect = 5e-05
Identities = 22/69 (31%), Positives = 38/69 (55%)
Frame = +3
Query: 429 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMKH 608
+++G L +VT + E+F++ G V SI D + GYAYV F+N ++ E A+
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAV-TRRSLGYAYVNFHNMEDGEKALDE 140
Query: 609 MDGGQIDGQ 635
++ I G+
Sbjct: 141 LNYTLIKGR 149
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/72 (22%), Positives = 38/72 (52%)
Frame = +3
Query: 426 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMK 605
R+ + + N+T + + IF +G ++ + D + +G+ Y+++ N A NA++
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD--DQNRSKGFGYIQYRNPISARNALE 398
Query: 606 HMDGGQIDGQEI 641
M+G + G+ +
Sbjct: 399 KMNGFDLAGRNM 410
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 41.1 bits (92), Expect = 2e-04
Identities = 19/62 (30%), Positives = 36/62 (58%)
Frame = +3
Query: 429 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMKH 608
+H+G L +VT ++ F +G + S+ + R R YA+VEF+ ++A+ AM++
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVA--LHRKEKAVDRSYAFVEFDEPEDAKEAMEN 65
Query: 609 MD 614
M+
Sbjct: 66 MN 67
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 39.9 bits (89), Expect = 5e-04
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +3
Query: 429 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMKH 608
+ +GRL+ NV + + F YGT+ MD +GY YV+F + A+ A+
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDG-QSGRSKGYGYVDFETPEAAKAAVAA 323
Query: 609 MDGGQIDGQEI 641
+IDG+ +
Sbjct: 324 NGTKEIDGRMV 334
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 37.5 bits (83), Expect = 0.003
Identities = 23/116 (19%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Frame = +3
Query: 312 EKKKSVLPLSNDKAKIK--EKQXXXXXXXXXXXXXXXXXTRIHIGRLTLNVTRDHIHEIF 485
E K+ V + + AK++ ++Q +++G + +VT + + F
Sbjct: 16 EMKERVAEMEAEAAKLRAMQEQLDNETEALRNDKESIDAQSVYVGNVDYSVTPEELQSHF 75
Query: 486 STYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMKHMDGGQIDGQEITAAP 653
++ G+V + D+ H +G+AY+EF+ NA+ ++G + + + P
Sbjct: 76 ASCGSVNRVTILCDKFTGHP-KGFAYIEFSEPSLVPNALL-LNGSMLHERPLKVTP 129
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 36.7 bits (81), Expect = 0.004
Identities = 18/73 (24%), Positives = 39/73 (53%)
Frame = +3
Query: 429 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMKH 608
+++G L+ T + I+ +FS G ++ I +DR G+ +VE+ +A +++K+
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRF-TKTPCGFCFVEYFENQDALDSLKY 92
Query: 609 MDGGQIDGQEITA 647
+ +D + I A
Sbjct: 93 ISRTSLDERIIRA 105
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 36.3 bits (80), Expect = 0.006
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = +3
Query: 426 RIHIGRLTLNVTR-DHIHEIFSTYGTVKSIEFPMDRLHPHNGR--GYAYVEFNNADEAEN 596
R+ I L ++ + H+ FS +G V+ I+ P GR G+A+V + AE
Sbjct: 108 RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKG----GGRMCGFAFVWMKDRKAAEE 163
Query: 597 AMKHMDGGQIDGQEI 641
AM ++G +IDG+ I
Sbjct: 164 AMNSLNGTEIDGRPI 178
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 36.3 bits (80), Expect = 0.006
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +3
Query: 471 IHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMK 605
I ++FS YG V + FP L + R + YV+ DEA NA++
Sbjct: 682 ITKLFSAYGNVVDVRFPS--LRYNTNRRFCYVQMRKPDEAHNALQ 724
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 36.3 bits (80), Expect = 0.006
Identities = 23/79 (29%), Positives = 38/79 (48%)
Frame = +3
Query: 432 HIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMKHM 611
H+G L+ ++T + + + F V SI +D L RG+ YVEF AD A+
Sbjct: 97 HVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPL-TERSRGFGYVEFETADTLSAAL--- 150
Query: 612 DGGQIDGQEITAAPVLVPV 668
+ G+++ PV + V
Sbjct: 151 ---ALSGEDLMGRPVRITV 166
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 35.5 bits (78), Expect = 0.010
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Frame = +3
Query: 429 IHIGRLTLNVTRDHIHEIFSTYGTVKSIE-------FPMDRLHPH----NGRGYAYVEFN 575
I++G + ++ + I + FS YG V+SI +P ++ P NG Y +V+F
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQYGFVKFV 78
Query: 576 NADEAENAMKHMDGGQIDGQEIT 644
NA+ E +K G + +++T
Sbjct: 79 NAESIEEVLKDAKGMTLGQRKLT 101
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 34.3 bits (75), Expect = 0.023
Identities = 14/69 (20%), Positives = 36/69 (52%)
Frame = +3
Query: 429 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMKH 608
+ + + + D + +IFS +GTV + + + RG+ ++ F+ +EA +A+ +
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPV-TKASRGFGFLSFSTVEEATSAIDN 161
Query: 609 MDGGQIDGQ 635
++ + G+
Sbjct: 162 LNSQEFYGR 170
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 34.3 bits (75), Expect = 0.023
Identities = 15/64 (23%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +3
Query: 429 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNG--RGYAYVEFNNADEAENAM 602
+++G + + + + +IF G VKS + +D P +G +GY + E+++ A +A+
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVID---PESGQPKGYGFCEYHDPATAASAV 63
Query: 603 KHMD 614
++++
Sbjct: 64 RNLN 67
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 33.5 bits (73), Expect = 0.041
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +3
Query: 423 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAM 602
T + +G L VT I ++++T G ++ +R N GY +VEF + EA +AM
Sbjct: 93 TTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNA-GYCFVEFASPHEASSAM 151
Query: 603 KHMDGGQIDG 632
M+ I G
Sbjct: 152 S-MNNKPIPG 160
Score = 30.3 bits (65), Expect = 0.38
Identities = 16/71 (22%), Positives = 33/71 (46%)
Frame = +3
Query: 429 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMKH 608
+ +G L+ V+ + + +F +G + ++ P G+G +V+F N AE A+
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPP-------GKGCGFVQFVNRQSAEIAINQ 357
Query: 609 MDGGQIDGQEI 641
+ G + I
Sbjct: 358 LQGYPLGNSRI 368
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 32.7 bits (71), Expect = 0.071
Identities = 18/77 (23%), Positives = 33/77 (42%)
Frame = +3
Query: 423 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAM 602
TR+ +GR+ TR+ + + F YG + + G+ +VE +A +A + +
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKLM---------NGFGFVEVEDARDARDIV 54
Query: 603 KHMDGGQIDGQEITAAP 653
G + G I P
Sbjct: 55 NDFQGKEFMGSRIVVEP 71
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 552 GYAYVEFNNADEAENAMKHMDGGQIDGQEIT 644
G VEF+ ++ NA+ ++G I GQ +T
Sbjct: 135 GAGVVEFSTEEDMRNALTSLNGEVIKGQAVT 165
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 31.9 bits (69), Expect = 0.12
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 456 VTRDHIHE-IFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMKHMDGGQIDG 632
VT+D E IFS +G + S + D+ + YA++EF+N + E A M ID
Sbjct: 254 VTQDEDLELIFSRFGKIISCQVIRDK-ETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDD 312
Query: 633 QEI 641
I
Sbjct: 313 SRI 315
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 30.3 bits (65), Expect = 0.38
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +3
Query: 471 IHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMKHMDGGQIDGQEI 641
+ + F +G + ++ D L R Y++V+F N D+A A+ +DG+ I
Sbjct: 99 VKDYFQQWGPLLHVKVLKDWLQ----RPYSFVQFQNTDDASKALSEAQNTILDGRHI 151
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 30.3 bits (65), Expect = 0.38
Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Frame = +3
Query: 429 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRG----YAYVEFNNADEAEN 596
I++G L +HE+F +G + + +A++ F N A+N
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 597 AMKHMDGGQIDGQEI 641
A+ ++G G +
Sbjct: 82 AIASLNGSSFQGNTL 96
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 30.3 bits (65), Expect = 0.38
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +3
Query: 429 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAM 602
+++ L + + IH +FS YG VK I L P N +Y ++A A +A+
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWM----LSPDNSAIVSYESLSSAIVARDAL 55
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 29.5 bits (63), Expect = 0.66
Identities = 22/67 (32%), Positives = 32/67 (47%)
Frame = +3
Query: 441 RLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMKHMDGG 620
++ N R ++ +FSTYGTV I L RG A+V F + A AMK +
Sbjct: 14 KINKNDLRTALYMLFSTYGTVVDIV----ALKTPKMRGQAHVVFFDPSAAAIAMKALKNF 69
Query: 621 QIDGQEI 641
G+E+
Sbjct: 70 IFFGKEM 76
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +3
Query: 504 KSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMKHMDGGQIDGQEITAAPVL 659
KS ++ D P + Y EF N D AE+ + G E +PV+
Sbjct: 228 KSSDYDPDLCAPRTEGSFIYEEFMNVDNAEDVKVYTVGPHYSHAETRKSPVV 279
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/63 (19%), Positives = 31/63 (49%)
Frame = +3
Query: 429 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMKH 608
+ + L+ + + + ++F +G ++ + D+ +G+A+V + + D A A
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDK-ETGRAKGFAFVSYYDRDCAIKARDR 262
Query: 609 MDG 617
+DG
Sbjct: 263 LDG 265
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +3
Query: 429 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMKH 608
I+IG L ++ D I +FS +G I D+ +G+A++++ + A+ +
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDK-ETGKSKGFAFLKYEDQRSTVLAVDN 91
Query: 609 M 611
M
Sbjct: 92 M 92
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 477 EIFSTYGTVKSIEFPMDRL-HPHNGRGYAYVEFNNADEAENAMKHMDGGQIDGQEITAA 650
E F YG + I + NG Y+ + ++A A+ +DG DG+ + A+
Sbjct: 140 EYFGQYGKIIKIAINKKAAANSANGHVGVYITYQRKEDAARAIAAIDGSVSDGRHLRAS 198
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 552 GYAYVEFNNADEAENAMKHMDGGQIDGQEITAA 650
G V F+N +EAE ++ M G DG+ + A+
Sbjct: 298 GVVTVRFSNNEEAEACVRLMQGRYFDGRVVEAS 330
>SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit
S14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +1
Query: 274 LIGRRLEIDHQQEKKKNLCYLYQMTKLKLR 363
L+ RRL +H+ E++ NL Y+Y+ +L LR
Sbjct: 15 LLCRRLFAEHEVERQSNL-YIYRNPELPLR 43
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -1
Query: 596 IFCFISIIKLNI-CVSSSIMWVKSVHRKLN*FHSTICRKYFMDVITRYI 453
IF F ++ + I C ++ +W K V RKL ++ T + F+ ++ +I
Sbjct: 577 IFIFALVVSMAIYCTAAYFVWQKKVERKL--WYLTNSKLSFVPILVSFI 623
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/52 (25%), Positives = 21/52 (40%)
Frame = +3
Query: 486 STYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMKHMDGGQIDGQEI 641
S Y +E+P R PH Y ++ + + N M ++ G G I
Sbjct: 933 SNYMQESDLEYPYKRWFPHVFMDSDYTQWTHDSDIRNRMLPLENGSFLGYHI 984
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 300 SPTGEKKKSVLPLSNDKAKIKEKQ 371
SP+ + KK L L ND +IKEK+
Sbjct: 562 SPSIDMKKESLELKNDTTEIKEKK 585
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +3
Query: 477 EIFSTYGTVKSIEFPMDRLHPHNGR----GYAYVEFNNADEAENAMKHMDGGQI 626
++ + G VK F M NG+ G + +F N D A+ ++ +DG QI
Sbjct: 64 KVLAKIGKVKENGFYMP-FEEKNGKKMSLGLVFADFENVDGADLCVQELDGKQI 116
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/58 (18%), Positives = 26/58 (44%)
Frame = +3
Query: 429 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAM 602
+ +G L + + F G++ + D + G+G+AY++F + + A+
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDP-KTNLGKGFAYIQFKDTMGVDKAL 328
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 258 KDRRDADREKIRDRSPTGEKKKSVLPLSNDK 350
K RR A+REK+R G+K K L + K
Sbjct: 479 KARRRAEREKLRSEGLLGKKSKKKLLRESQK 509
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +3
Query: 429 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAENAMKH 608
I++G L + + + + +FST K + F P +VEF N A A+K+
Sbjct: 428 IYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGP-----MCFVEFENIPYAMEALKN 482
Query: 609 MDG 617
+ G
Sbjct: 483 LQG 485
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = +1
Query: 307 QEKKKNLCYLYQ-MTKLKLRKN 369
+E KK++ YL + + KLKLRKN
Sbjct: 46 EESKKSIIYLEERLEKLKLRKN 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,310,600
Number of Sequences: 5004
Number of extensions: 43509
Number of successful extensions: 172
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -