Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_I13
(768 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 106 4e-24
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 103 4e-23
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo... 42 1e-04
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe... 34 0.019
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p... 33 0.034
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 25 9.0
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.0
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe... 25 9.0
>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 106 bits (254), Expect = 4e-24
Identities = 45/66 (68%), Positives = 54/66 (81%)
Frame = +1
Query: 46 TVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGV 225
T GK+I C AAVAW+ PLSIE ++V PP+ EVR+KI +GVCHTDAYTLSGKDPEG+
Sbjct: 6 TAGKIINCKAAVAWQPAAPLSIENVQVFPPRVHEVRIKIVNSGVCHTDAYTLSGKDPEGL 65
Query: 226 FPVVLG 243
FPV+LG
Sbjct: 66 FPVILG 71
Score = 33.1 bits (72), Expect = 0.045
Identities = 18/30 (60%), Positives = 21/30 (70%)
Frame = +2
Query: 245 HERAGGIVESVGEGVTSVKPGDHVVPLLRP 334
HE AG IVESVG VT+V+ GD V+ L P
Sbjct: 72 HEGAG-IVESVGPQVTTVQVGDPVIALYTP 100
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 103 bits (246), Expect = 4e-23
Identities = 48/68 (70%), Positives = 54/68 (79%)
Frame = +1
Query: 40 MSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPE 219
MS GK I C AAVAW A +PLSIE+I+V PPKA EVRVK+ + VCHTDAYTLSG DPE
Sbjct: 1 MSFEGKTITCKAAVAWGAKEPLSIEDIQVAPPKAHEVRVKVDWSAVCHTDAYTLSGVDPE 60
Query: 220 GVFPVVLG 243
G FP+VLG
Sbjct: 61 GAFPIVLG 68
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +2
Query: 245 HERAGGIVESVGEGVTSVKPGDHVVPLLRP 334
HE AG IVES+GEGV +V+PGDHV+ L P
Sbjct: 69 HEGAG-IVESIGEGVINVRPGDHVILLYTP 97
>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
Adh1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 350
Score = 41.9 bits (94), Expect = 1e-04
Identities = 25/53 (47%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 64 KCLAAVAWEAGKPLSI--EEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDP 216
K LAAV G P ++ EE+ V P EV V I TGVCHTD + L G P
Sbjct: 6 KQLAAVFHTHGGPENVKFEEVPVAEPGQDEVLVNIKYTGVCHTDLHALQGDWP 58
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 245 HERAGGIVESVGEGVTSVKPGDHV 316
HE AG +V+ VG GVT +K GD V
Sbjct: 69 HEGAGVVVK-VGAGVTRLKIGDRV 91
>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 325
Score = 34.3 bits (75), Expect = 0.019
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 103 LSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVFPVVLG 243
+ I+ + + PK GE+ VKI A + +D +G P V+P ++G
Sbjct: 23 IEIQSVPIPQPKNGELLVKIEAAAINPSDLMNATGGFPYTVYPRIVG 69
>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 360
Score = 33.5 bits (73), Expect = 0.034
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +2
Query: 245 HERAGGIVESVGEGVTSVKPGDHV 316
HE AG +VE VG+GV+S+KPGD V
Sbjct: 67 HESAGVVVE-VGKGVSSLKPGDPV 89
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 64 KCLAAVAWEAGKPL-SIEEIEVDPPKAGEVRVKITATG 174
K ++ +AWE KPL + E+I D +GE+ V T +G
Sbjct: 63 KVISCIAWEQ-KPLYASEQITTDISGSGEILVLGTNSG 99
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 249 KGRAESWRVSVRESLQSSPGTT*YLCYVPQCN 344
KG ++ R ++ L+S G ++C VP+C+
Sbjct: 83 KGMVQTSRFALVAHLRSHTGEKPFICSVPECD 114
>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 260 GIVESVGEGVTSVKPGDHVV 319
GI+E VGE V + GD VV
Sbjct: 70 GIIEKVGEDVEGFEKGDSVV 89
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,562,175
Number of Sequences: 5004
Number of extensions: 30075
Number of successful extensions: 115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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