Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_I12
(907 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 29 1.2
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 28 1.6
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 28 2.1
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc... 27 2.8
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 3.7
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 27 4.8
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 26 6.4
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 8.5
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb... 26 8.5
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 385 NSEXPWCIFSFCGFHCKP*KSLQVSWLP 302
N E P C+ +HCKP L V W+P
Sbjct: 666 NVESP-CLMLQHSYHCKPNSKLNVFWMP 692
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 28.3 bits (60), Expect = 1.6
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = -1
Query: 301 RLIW*DFILTSCRISQSSGNRVILRIIRTHLLETQIFC--EISLVRNGIRN*AVKPTESR 128
RLIW + + +S S G + +T++ E C +IS N I + + + TE+
Sbjct: 365 RLIWSELLFFDRMLSMSLGRPFAISNDQTNVHEPSNVCDIQISSQSNCIPDPSYERTEAS 424
Query: 127 LVLFKSVIQLIHQIFISRIF 68
+FK+ + + + R F
Sbjct: 425 FTIFKAKLSKVIASVLDRAF 444
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 233 NNTIAGALTYPTRSQDEVLPNQPRQPRNLQGLL 331
++TI+ + PT+ ++ V PN P P + Q LL
Sbjct: 7 SSTISPTFSTPTKKRNLVFPNSPITPLHQQALL 39
>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
Uch2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 27.5 bits (58), Expect = 2.8
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Frame = +3
Query: 483 LTNTERIR----SIQFGEP-LPEDVQAAFDN--VLEYIDDIDTANDFYKMGGFAMFPICY 641
L N+E IR S +P + E+V+AA D V +I + N FY++ G PI +
Sbjct: 124 LGNSEHIRCCHNSFARSDPFISEEVRAATDEDEVYHFIAYTNINNVFYELDGLQAAPINH 183
Query: 642 GS 647
GS
Sbjct: 184 GS 185
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.1 bits (57), Expect = 3.7
Identities = 18/79 (22%), Positives = 36/79 (45%)
Frame = +3
Query: 276 KMKSYQISRGSQETCKDFYGLQWKPQKLKMHQGNSELGPIDDERRKFLEDALKSLTVNIA 455
K K Y+ + + + Y Q + + K+ Q N ++DE RK LE+ L + +
Sbjct: 44 KSKDYESIKNDRIVTEVNYEQQLRNSEKKLLQSNERYDLLEDE-RKLLENELSQIKEYLR 102
Query: 456 EVLLNAIRILTNTERIRSI 512
E + +L + ++S+
Sbjct: 103 EKSSSYDTVLHDCSSLKSV 121
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 26.6 bits (56), Expect = 4.8
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +3
Query: 348 PQKLKMHQGNSELGPIDDERRKFLE---DALKSLTVNIAEVLLNAIRILTNTERIRSIQF 518
P ++K H+ +SE P+D E K E D L + E L + NT++ ++
Sbjct: 796 PAEIKRHKESSETKPVDKEEVKKNEKEKDDPMRLAQQLLESLAPDFALHENTQQKSPVEK 855
Query: 519 GEPLPEDVQAAFDNVLEYIDDIDTAN 596
+ L +D A+ + +Y + A+
Sbjct: 856 PKKLRKDRYASVEE-FDYFSSTEHAS 880
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 574 IYSRTLSKAACTSSGSGSPNCMLRILSVLVRILMAFSNTSAM 449
+YSR A SSG C+ R+L RIL+ T+++
Sbjct: 1352 LYSRVAEGGANFSSGQRQLICLARVLLTSTRILLLDEATASV 1393
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 574 IYSRTLSKAACTSSGSGSPNCMLRILSVLVRILMAFSNTSAM 449
+YSR A SSG C+ R L R+L+ T+A+
Sbjct: 1350 LYSRVTEGGANLSSGQRQLMCLTRALLTPTRVLLLDEATAAV 1391
>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = +1
Query: 499 GFVAYSLGNHYQKTYRRLLTMSLNILTILIQQMTSIRWEGL 621
G +A S GNH Q T+ + ++ Q I+W +
Sbjct: 163 GVIACSAGNHAQGVAYSARTLGVKATIVMPQNTPEIKWRNV 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,273,961
Number of Sequences: 5004
Number of extensions: 63256
Number of successful extensions: 181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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