Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_I12
         (907 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0708 + 19648511-19648808,19649189-19649280,19650850-196510...    46   4e-05
03_06_0495 + 34323082-34323173,34323600-34323742,34324265-343243...    42   7e-04
03_02_0515 - 9046450-9046996,9047125-9047227,9047319-9047540,904...    36   0.059
06_02_0025 + 10719385-10719424,10719885-10720063                       30   2.9  
09_02_0327 - 7284829-7284889,7284946-7286126                           29   5.1  
01_01_0959 + 7542671-7542764,7542987-7543069,7543448-7543510           28   8.9  

>09_04_0708 +
           19648511-19648808,19649189-19649280,19650850-19651000,
           19651779-19651906,19652099-19652257,19652325-19652507,
           19652978-19653178,19653269-19653289
          Length = 410

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 9/194 (4%)
 Frame = +3

Query: 264 RQEVKMKSYQISRGSQETCKDFY--GLQWKPQKLKMHQGNSELGPIDDER---RKFLEDA 428
           + E ++ S + SRG     +D +  G       L+   GNS+   + ++    +K   D 
Sbjct: 62  KDEGELVSGEESRGGGSVVEDEFAGGFGSLDSMLQWAIGNSDPDKLKEQAEGVQKLSADE 121

Query: 429 LKSLTVNIAEVLLNAIRILTNTE----RIRSIQFGEPLPEDVQAAFDNVLEYIDDIDTAN 596
           L    + I E L+  +++ ++ +     I  +       ED Q A   +L  ++ ID AN
Sbjct: 122 LLKRRMEIKE-LMEKLKMPSDADLMKIAIADLNNSSISLEDRQRALQELLILVEPIDNAN 180

Query: 597 DFYKMGGFAMFPICYGSENEKVRALASTGPG*ALSEQSVLPGKSSXKYGLLNVLLTLVQS 776
           D  K+GG         + NE++R  ++   G A S+ + L       YG L  L+ +  +
Sbjct: 181 DLDKLGGLVAVIQDLNNANEEIRTTSAWVLGKA-SQNNALVQNQILGYGALARLVKMGYA 239

Query: 777 EQGEALVKCLYALS 818
              E   K LYA+S
Sbjct: 240 TSAEEATKALYAIS 253


>03_06_0495 +
           34323082-34323173,34323600-34323742,34324265-34324315,
           34324405-34324626,34324731-34324833,34325156-34325552,
           34326564-34326735,34326995-34327089,34327246-34327455
          Length = 494

 Score = 41.9 bits (94), Expect = 7e-04
 Identities = 23/102 (22%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
 Frame = +3

Query: 321 KDFYGLQWKPQ-KLKMHQGNSELGP--IDDERRKFLEDALKSLTVNIAEVLLNAIRILTN 491
           KD  G  W    K  +  G+    P  + +E +K+  +A+++ T+++ + +    +++  
Sbjct: 3   KDGGGPDWNGLLKWSLAHGDGTAKPRSLSEEDKKWFMEAMQANTMDVVKRMKEITQVMKT 62

Query: 492 TERIRSIQFGEPLPEDVQAAFDNVLEYIDDIDTANDFYKMGG 617
            + +  +Q     PE+++   D + E+++ ID AND + +GG
Sbjct: 63  PDDV--LQSQGVTPENIEDMLDELQEHVESIDMANDLHSIGG 102


>03_02_0515 -
           9046450-9046996,9047125-9047227,9047319-9047540,
           9048350-9048400,9048966-9049168,9049276-9049361
          Length = 403

 Score = 35.5 bits (78), Expect = 0.059
 Identities = 21/94 (22%), Positives = 46/94 (48%)
 Frame = +3

Query: 396 DDERRKFLEDALKSLTVNIAEVLLNAIRILTNTERIRSIQFGEPLPEDVQAAFDNVLEYI 575
           ++ERR   E   + + V++    +  I +L +T  +  ++     P+D++     +  ++
Sbjct: 49  EEERRWLAEAVERHMMVDVVS-RMREIALLMSTP-LSVLEAHGITPDDIEGLLAELQVHV 106

Query: 576 DDIDTANDFYKMGGFAMFPICYGSENEKVRALAS 677
           + ID AND + +GG         + N ++RA A+
Sbjct: 107 ESIDMANDLHSVGGLVPVIKYLRNSNARIRARAA 140


>06_02_0025 + 10719385-10719424,10719885-10720063
          Length = 72

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 692 SSVRTIRSARKKFXKVRXAERSTHSSAIRARRSPRQ 799
           + VR +    K+   +R  +R  HS  IR +R PRQ
Sbjct: 13  TGVRNVGKGSKQANLIRKQQRRLHSDKIRLQRQPRQ 48


>09_02_0327 - 7284829-7284889,7284946-7286126
          Length = 413

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 22/91 (24%), Positives = 33/91 (36%)
 Frame = -1

Query: 883 PXXPXPPGTPAXXRGGYXRXPHDKAYRHLTRASPCSDCTRVSRTFSXPYFXELFPGRTDC 704
           P  P PP  P   R  Y R   D        +SP       +   + P   +   GRT+ 
Sbjct: 57  PPPPPPPPPPPRGRRYYRRVSGDDLDVPSCSSSPSPPSDEENPPPNPPSLFDFIGGRTNL 116

Query: 703 SDRAQPGPVLARARTFSFSLP*HIGNIANPP 611
             R++  P +A     + +     G+  NPP
Sbjct: 117 -HRSRTAPAMAPLNAAAIAAAAASGDSRNPP 146


>01_01_0959 + 7542671-7542764,7542987-7543069,7543448-7543510
          Length = 79

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 11/19 (57%), Positives = 17/19 (89%)
 Frame = -1

Query: 58  LETFTVELHRMFSKRKPIS 2
           +++FTV LHRMFS+R+ I+
Sbjct: 55  VKSFTVILHRMFSRRRAIT 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,897,486
Number of Sequences: 37544
Number of extensions: 390411
Number of successful extensions: 1052
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)