Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_I09
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    36   0.007
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    28   1.9  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   4.3  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    26   5.7  
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    26   5.7  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    25   10.0 
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce...    25   10.0 

>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
 Frame = +3

Query: 456 EVANEPLS-MGTTLFELYLALQRFLLLGQGLNETEWSSYAISKFHGWFFGGVAQWLDIAA 632
           E AN  ++ +   + E+Y  L++ + + Q  +  E   Y I  F G+F   +  WLD   
Sbjct: 580 EKANADINDLTKDMLEIYSDLKQMIHVLQEYHNEE---YRIGSFEGFFQPFIDSWLDNVE 636

Query: 633 FKALTRIEKAVDLDNLVPVDTNVKYSSXGVDTLAIFYQIKIFWQQLXWPD 782
             A     ++++ DN     +  +YSS  VD    F+Q     +   W D
Sbjct: 637 ASAEQWFLRSLEKDNFDENSSEGQYSSSIVDLFHAFHQAFRTLEGFEWED 686



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 237 RAVEYYDRVFIEVMSFPYTKALYGLYESKIASLVEPEVIEVCK 365
           R +E    +F   +S   TK L   Y+S +A  +    IE+CK
Sbjct: 135 RKIEDMFLIFASSVSSELTKRLGTAYDSNLADRITASFIELCK 177


>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +3

Query: 66  DDAGKLNVYEVLNQAVIQGASDWFVHILDNNECKDNT--EESRLQHLI 203
           DD   L  +   N+ ++ G+ D  V +LD  + +D+T  EE  L H+I
Sbjct: 147 DDITHLQFHPKDNELLLTGSVDGLVSLLDTTKEEDSTDPEEDPLLHVI 194


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -1

Query: 100 NTSYTLSFPASSLSQP*EVLGNKSIHSGTSNTS 2
           + S T ++P+S+LS     L + S+HS ++++S
Sbjct: 603 SASITSTYPSSTLSMTTSHLSSSSVHSSSAHSS 635


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 170 ILAFIIV*YMNEPVGGALYHCLIQYFVHVK 81
           +LA +   Y N P    +  CL +Y++H+K
Sbjct: 366 VLANLTEAYENAPQSTIISECLAKYYIHLK 395


>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 120 PVSLLDSILRTR*VSQRHLSANHKKS*GTNLYTPEHP 10
           P+S      RT   SQR+  A H  S GT L+ P  P
Sbjct: 9   PLSNNPPAARTHDHSQRNNHARHVSSSGTTLFAPVKP 45


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 505 YSSNSVVP-IDKGSLATSGAPSPVTPAMPPA 416
           Y S +  P ++KG+ ATS   S V P  PPA
Sbjct: 235 YDSLASAPDLEKGAYATSVPESYVAPMEPPA 265


>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 363 KCLKRLQYNEGSTTTVHLAGGIAGVTGL 446
           K + R Q  +G+ +++H  G +  +TGL
Sbjct: 286 KVIGRFQGVKGAPSSIHCLGNVVAITGL 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,445,860
Number of Sequences: 5004
Number of extensions: 73215
Number of successful extensions: 220
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)