Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_I08
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    28   1.9  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    27   4.5  
SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease Pnu1|Schizosa...    26   5.9  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   5.9  
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po...    26   7.8  

>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/47 (23%), Positives = 27/47 (57%)
 Frame = -2

Query: 693 NVVHQVLAHHARVLSARPIRVVVIIDFTCTQIAAFVNLIVRCISLLL 553
           N + +++    + L  RP+ V ++  + CT  +A+V+ ++ C+  +L
Sbjct: 115 NSLQKIIKTLEKELDYRPVSVQLVDAYCCTNPSAYVSALLVCLKGML 161


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 21/64 (32%), Positives = 30/64 (46%)
 Frame = -1

Query: 598 CSLC*LDRPVHKSVARIRTILRLSEVGCILSCNRDSSHRGVLCDHRTRRNSREYPISALS 419
           C  C   RP  K +     I RL ++  ++  NR S H G L   R RR+   YP+  L+
Sbjct: 713 CPGCKAFRPATKRLE----IWRLPKI-LVIHLNRFSGHGGDLRRRRKRRDLVVYPVFDLN 767

Query: 418 NRLF 407
            + F
Sbjct: 768 LKQF 771


>SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease
           Pnu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = +1

Query: 526 QITSVSCEYEQQTYAPDDQVNKGCNLCTCKVDNDNNAYWSCTQDTCMMSEDLVNDVT-NK 702
           Q+ +  C++ Q+       ++   N+C    D  N  YW+  +D C         VT   
Sbjct: 143 QVPAADCKFSQEAMNETFYLS---NMCPQVGDGFNRNYWAYFEDWCRRLTSKYGSVTIMT 199

Query: 703 GPL 711
           GPL
Sbjct: 200 GPL 202


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +1

Query: 496  PDYKKVCSPPQITSVSCEYEQQTYAPDDQVNKGCNL 603
            P+ K +C   +I  +    +  +Y  ++++N GC L
Sbjct: 1199 PEEKYICQEGEIGEIWINGKHGSYCENNELNSGCEL 1234


>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 19/75 (25%), Positives = 34/75 (45%)
 Frame = -1

Query: 583 LDRPVHKSVARIRTILRLSEVGCILSCNRDSSHRGVLCDHRTRRNSREYPISALSNRLFD 404
           +D P H     ++T+L +S +  + S  + + +     ++RT + S + P S  S  L  
Sbjct: 248 IDDPAHSDFLNLKTVLFISHLDILKSITKQTYYE----NYRTEKLSNDSP-SNTSLSLQK 302

Query: 403 CSSIYCRLDARRSTG 359
            +SI    D R   G
Sbjct: 303 QNSIVANEDKRSVNG 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,236,444
Number of Sequences: 5004
Number of extensions: 67340
Number of successful extensions: 173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)