Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_I07
(814 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 32 0.47
11_06_0128 - 20389375-20389781,20389988-20392787 31 1.1
10_06_0184 - 11577331-11577360,11577616-11577722,11578048-115781... 31 1.1
06_03_1167 + 28111923-28113218 31 1.4
03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235... 31 1.4
10_06_0183 - 11562576-11562824,11563894-11564000,11564494-115645... 29 3.3
11_06_0297 + 22056644-22058212,22058316-22058423,22058513-220586... 29 5.8
06_01_0111 + 870781-871017,871194-871240,871681-871947,872196-87... 29 5.8
11_01_0401 - 3020606-3020932,3021480-3021626,3021711-3021878,302... 28 7.7
05_06_0276 + 26878732-26879574,26879920-26880387,26880800-268810... 28 7.7
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 32.3 bits (70), Expect = 0.47
Identities = 24/57 (42%), Positives = 28/57 (49%)
Frame = +3
Query: 456 AGRRREKTFTSRSKRCRLSGRTIGSDPRSPGSVVRAPPDARERQHEELLKNRSPRRR 626
A RRE + S R R R GS PR R+PP RER ++RSPRRR
Sbjct: 211 AVERREHSRRSGRSRSRSPARDRGSPPRR-----RSPPARRERSPAP--RSRSPRRR 260
Score = 28.3 bits (60), Expect = 7.7
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +3
Query: 381 PDREDHSLPRR*SGEGSSVQRNDPCAG--RRREKTFTSRSKRCRLSGRTIGSDPRSP-GS 551
P R+ S PRR S + P + RRR T+ S R R R GS RSP S
Sbjct: 229 PARDRGSPPRRRSPPARRERSPAPRSRSPRRRSPVKTTSSHRERSPVRRNGSPRRSPVRS 288
Query: 552 VVRAPPDARERQHEELLKNRSPRRRKT 632
+ R+P R+R E++ RSP++ ++
Sbjct: 289 IGRSP--QRDRVKEQV---RSPKQAQS 310
>11_06_0128 - 20389375-20389781,20389988-20392787
Length = 1068
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +1
Query: 526 VAILGALEALYVPLQMRERDSTRNFSRIGLHAEEKRTENFEKIVRNAIAFERARVL 693
VAILG L LY L R++++T+N S + A R+ +F ++ + F +L
Sbjct: 697 VAILGILLLLYKYLNRRKKNNTKNSSETSMQAH--RSISFSQLAKATEGFSATNLL 750
>10_06_0184 -
11577331-11577360,11577616-11577722,11578048-11578126,
11578213-11578299,11580935-11581207,11581298-11581447,
11582186-11582785
Length = 441
Score = 31.1 bits (67), Expect = 1.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 670 LWHCERSFRSSQFVFLRRGDR 608
+WHC +F S+ F F RRG R
Sbjct: 26 VWHCTDAFHSAAFAFRRRGTR 46
>06_03_1167 + 28111923-28113218
Length = 431
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 281 GASSTESGNLTSTSTSRRRCGNATTYLAAGLYWPRPGRSL 400
GASS++SG+ + +T++R G++ + Y PG SL
Sbjct: 288 GASSSQSGSAAAAATAKRMAGSSKMRVIPSRYSLTPGASL 327
>03_01_0300 +
2350232-2352274,2352349-2352669,2352752-2352838,
2353031-2353708,2353800-2353964,2354139-2354433,
2354581-2354795,2354885-2355190,2355269-2355332,
2355426-2355665,2355783-2355886
Length = 1505
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 391 KITPYHDARVVKEAAYKGMTRALDAGAKRPL 483
++TPY DA +V A ++ L GA+RPL
Sbjct: 227 RVTPYGDAGIVSLATLSWLSPLLSVGAQRPL 257
>10_06_0183 -
11562576-11562824,11563894-11564000,11564494-11564572,
11564659-11564745,11570563-11570817,11570922-11571071,
11571163-11571798
Length = 520
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 670 LWHCERSFRSSQFVFLRRGDRFLR 599
+WHC +F + F F RRG R R
Sbjct: 36 VWHCTDAFHRAAFAFRRRGTRRAR 59
>11_06_0297 +
22056644-22058212,22058316-22058423,22058513-22058678,
22059000-22059056,22059382-22059479,22059556-22059765,
22060469-22060582,22060819-22060948,22061165-22061298,
22062279-22062359,22062798-22062872,22063210-22063221
Length = 917
Score = 28.7 bits (61), Expect = 5.8
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Frame = -2
Query: 309 KFPDSVDEAPDMSRQWHVKFLGVKD*DHRIVISRLKVCF-DENILV*LVFDERHFWTIVD 133
+F ++ E DM W+ FL + D+R+VI+ L +CF E +L+ + DE+ +D
Sbjct: 523 EFNEACAEIQDM---WN-DFLEISVLDYRVVITPLAICFISEQLLLSMSNDEKAASKSID 578
Query: 132 YV-VNARFGDIE 100
++A F +++
Sbjct: 579 AADIDALFPNVD 590
>06_01_0111 +
870781-871017,871194-871240,871681-871947,872196-872848,
872997-873043,873124-873169,873371-873416,873592-873720,
873822-873942
Length = 530
Score = 28.7 bits (61), Expect = 5.8
Identities = 31/111 (27%), Positives = 44/111 (39%)
Frame = +3
Query: 201 PSVG*LRCGDLNPLPRGT*RAIAETYRELRRRNRET*QAHPQVGDGVAMRLRIWRQDYIG 380
PS G C DL P+ G + E+ R T + G R RI +++ +
Sbjct: 360 PSAGFEVCDDLPPI--GQAMTVCESTRTNAANGNGTADCRSK---GKDFRERILKEN-LK 413
Query: 381 PDREDHSLPRR*SGEGSSVQRNDPCAGRRREKTFTSRSKRCRLSGRTIGSD 533
DR+ SL R S + DP RR E++ + R S I SD
Sbjct: 414 DDRKKGSLTRMGSISSEQADKGDPTKKRRVERSRKMAEAKERSSTPVIPSD 464
>11_01_0401 -
3020606-3020932,3021480-3021626,3021711-3021878,
3021960-3022218,3024469-3024522,3025200-3025375
Length = 376
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -3
Query: 647 SKFSVRFSSAWRPILEKFLVLSLSRIWRGTY 555
S+ +++FSS W ++EK + S + W T+
Sbjct: 60 SRQNLKFSSNWNDVMEKLVFFSNATNWASTF 90
>05_06_0276 +
26878732-26879574,26879920-26880387,26880800-26881021,
26881153-26881278,26881309-26881573,26881719-26881936
Length = 713
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/46 (43%), Positives = 24/46 (52%)
Frame = +3
Query: 489 RSKRCRLSGRTIGSDPRSPGSVVRAPPDARERQHEELLKNRSPRRR 626
R + R SGR S RSP +PP RER ++RSPRRR
Sbjct: 7 RREHSRRSGR---SRSRSPARDRGSPPRRRERS--PAARSRSPRRR 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,285,227
Number of Sequences: 37544
Number of extensions: 470748
Number of successful extensions: 1398
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1397
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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