Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_I03
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    29   0.82 
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    27   2.5  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    27   2.5  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    27   2.5  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    27   4.4  

>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
 Frame = +1

Query: 376 GFNSKQLDSWLKYWAEEYPFA-ERQKFLNQYPHFKTNIQGLNIHFMRITPKVPKDVEI-- 546
           G  S+QL S++  +A       E +K  N Y +FK N+  L+++  ++  +V  D     
Sbjct: 366 GIVSRQLLSFIAPFAPTPESKQELEKLGNDYDYFKKNVVDLHLNLAQVLRRVSPDAPFTK 425

Query: 547 VPLLLLHGWPGSVREFYEAIPHLTAVSKDRNFALEIIXSK 666
           +P  +L      ++  Y +I   + V  D+     ++  K
Sbjct: 426 LPFSMLLENMAHMKPRYYSISSSSVVHPDKVHVTAVVDKK 465


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = +2

Query: 581 PSGSSTKPFLISQLSAKTGTSLWKLSA---PSLPGL 679
           PS +S+ P LIS  S++TG+    LS+   PS PG+
Sbjct: 82  PSVASSNPSLISSGSSQTGSPSQSLSSNKEPSSPGI 117


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 397 DSWLKYWAEEYPFAERQKFLNQY 465
           ++W  YW   YPF +  K   +Y
Sbjct: 39  ENWKSYWKSHYPFVKNDKGKKKY 61


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -3

Query: 759 SGHQVFENDCNFSSSEXRDEPPRRKSHKPGKLGADNFQSEVPVFADS 619
           +GH+ F+     S+ E      R    K   + +D+ + EVP+  D+
Sbjct: 622 NGHENFQKQALTSTGEQSSSNSRANPSKLFNISSDDSEDEVPIIEDT 668


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = -3

Query: 501 NIQTLDISLEMRILVKELLPF-SEWVFFCPIFEPTVQLFRIEPVFE----ANTLQWRDER 337
           N+QTLD+SL    L+K+   + +++  +    EPT+Q       F+     N  +W D+R
Sbjct: 98  NLQTLDLSLAEFSLIKDAQNYLNKYASYFQAHEPTLQKLAKFGSFKLKETPNVHEWIDQR 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,590,727
Number of Sequences: 5004
Number of extensions: 77439
Number of successful extensions: 247
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)