Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_I02
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    27   2.6  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   3.4  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    27   4.5  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    27   4.5  
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex...    26   7.9  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    26   7.9  

>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 454 LLNTAMSSLKDSEEHTSPPATPGSRGVQVASSHFSKIRA 338
           L+NT +  LK  EE+ +PP  P       +  HF K+ A
Sbjct: 150 LVNT-IEKLKVKEENEAPPVIPAKPFSSSSEQHFRKVPA 187


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +2

Query: 95  EPYTRARAELSWLSLGTTRASTAEVTWRGERCTTS 199
           EPY + ++++S +++ T  ASTA++  R +   T+
Sbjct: 389 EPYLKDQSKISEIAVKTAMASTADILSRSKGSATA 423


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
 Frame = +3

Query: 336  LALIFEKCELATCTPRDPGVAGGDVCSSESFNEDIA--VFSKQIR-QEKPYYIADPEVDS 506
            LAL  + CELA      P     DV   ++  + IA  +FSK+   +E   ++ + EV  
Sbjct: 712  LALEADDCELAATIANIPEE---DVVLKKTLWQTIAKYMFSKKSGIKETLRFLENSEV-- 766

Query: 507  LMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVI-DXRETARPPDANGE 680
              +Q  +++R  L E  K+ +L DN C     C+K    +D  I    E A     N E
Sbjct: 767  --LQLPELIRL-LPEDIKLDDLSDNVCDELDHCMKRIEQLDFEIGQASEVAHEIQTNAE 822


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 19/66 (28%), Positives = 37/66 (56%)
 Frame = +3

Query: 432 EDIAVFSKQIRQEKPYYIADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLK 611
           E +++ SK+I +E  Y  A+P+    + + ++V+     + E +H+L D + H +   LK
Sbjct: 706 ETLSLMSKRILREDAYLDANPQY---IFEDMEVMS----DFE-LHKLADQYRHLHPFALK 757

Query: 612 GKMPID 629
           GK  +D
Sbjct: 758 GKPWMD 763


>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
           subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 95

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 390 GVAGGDVCSSESFNEDIAVFSKQIRQE 470
           G+ GG+  ++ S  +  ++F KQIRQE
Sbjct: 2   GIFGGNSGNAPSSEDKKSIFMKQIRQE 28


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 399 GGDVCSSESFNEDIAVFSKQIRQEKPYYIADPEVDSLMVQAIQVL 533
           GG + S+           +Q+ ++ P Y+  P+V SL + +I+ L
Sbjct: 344 GGSLISTSDHETGGLTVGRQVSKKYPEYLWKPQVLSLALHSIEYL 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,970,960
Number of Sequences: 5004
Number of extensions: 58149
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)