Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_I02
         (864 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    25   0.68 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   2.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   2.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   2.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   4.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.8  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 70  PKSFVVASGALHPGSGRAFMAQPR 141
           P S +VASG  H G  ++  AQP+
Sbjct: 919 PGSGIVASGQQHAGGWQSIYAQPQ 942


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 433 SLKDSEEHTSPPATPGSRG 377
           S+K + E+  PP  PG  G
Sbjct: 324 SMKTARENPGPPGVPGDHG 342


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 433 SLKDSEEHTSPPATPGSRG 377
           S+K + E+  PP  PG  G
Sbjct: 324 SMKTARENPGPPGVPGDHG 342


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 433 SLKDSEEHTSPPATPGSRG 377
           S+K + E+  PP  PG  G
Sbjct: 263 SMKTARENPGPPGVPGDHG 281


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +2

Query: 5   GCPIIYVYVCTCLCGVLGWARDRNRSWWPAEPYTRARAELSWLSLGTTRASTAE 166
           G  + + Y+ TCL  ++ W      S+W       AR  L   SL T     A+
Sbjct: 245 GYYLFHTYIPTCLIVIMSWV-----SFWIKPEAAPARVTLGVTSLLTLSTQHAK 293


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 143 TTRASTAEVTWRGERCTTSTG*PIPTWLQCTT 238
           T   + + +TW G   T   G  IPT L+  T
Sbjct: 387 TLSVNESNITWPGRLQTKPEGFMIPTHLKVLT 418


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 430  LKDSEEHTSPPATPGSRGVQVAS 362
            LK  +  TSP   PG  G+++ S
Sbjct: 1126 LKPQKPFTSPGGIPGPNGIKMPS 1148



 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 150 EPPRRRLHGGGSDVPRAQA 206
           +PP ++LH   S  P+AQA
Sbjct: 808 QPPHQQLHHHQSTHPQAQA 826



 Score = 22.2 bits (45), Expect = 6.3
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -3

Query: 292  SCGLVVP-RGGRERVLPAGGSALEPGGDGSACARGTSLPPPCNLRRGGSR 146
            S G  VP R  R   +    S  + G +     R TS P P ++ R GSR
Sbjct: 1360 SGGRPVPERPERVPTVDLSPSPSDRGRNDDGSDRLTSPPTPLSISRAGSR 1409


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,458
Number of Sequences: 438
Number of extensions: 5591
Number of successful extensions: 25
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)