Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_H21
(837 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 36 0.009
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 30 0.35
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 27 3.3
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 27 3.3
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 27 3.3
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 27 4.4
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 5.8
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 5.8
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 26 5.8
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 26 5.8
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 5.8
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 26 7.6
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 35.5 bits (78), Expect = 0.009
Identities = 24/88 (27%), Positives = 40/88 (45%)
Frame = +2
Query: 428 SSNPVLCSPPTCGKRGKEAASRCWSWILTVPSLKTSASRVVKSYLSTISTRTCTLKTFTL 607
S++ + S P ++S SW T P TS S+V S +++ T TFT
Sbjct: 594 STSVLYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTS 653
Query: 608 SDSLYVKFSTLST*WVKYSSWTSFWTEN 691
S S+ S+ +T ++S +S + N
Sbjct: 654 STSISTSSSSTATSSTSFASESSSFYSN 681
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 30.3 bits (65), Expect = 0.35
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Frame = -3
Query: 385 LTSSCPS-----TCGPTPGCT*SFPTRPISLFGMVKVEYIQQYVSITASGI--SSTMRSI 227
L ++CP T GP PG T +PT ++ Y S+++S I +ST+ +
Sbjct: 36 LLAACPQYITIYTNGPVPGTTTIYPTSNVASNTSENYPYTGS-KSLSSSSILSNSTISTS 94
Query: 226 GSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTESSLRSPFTEPKTSNMAGA 65
S V S + + T+ T S T SS+ S T P +S+++ +
Sbjct: 95 SSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTIPSSSSISAS 148
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 5 GAPDTRT*RTSVLTTATDAPRARHV*RFR--LRKGASQARLCVH 130
G PD +T T +L P RH+ RF+ ++ + RLC++
Sbjct: 123 GNPDAKTNWTPILPKLPCGPTQRHIYRFKEIPQQNFTHVRLCMY 166
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/27 (40%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = -2
Query: 305 RDGESRVYPAVR-VHNGERDFINDAVN 228
++G+ ++P+V+ +H GER+ IND V+
Sbjct: 20 KNGQILLHPSVQPLHPGERELINDIVS 46
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 505 DLNCPIVEDECKSGRKKLLVDYFHTNLHTQNFYAFRFF 618
D V +E KS K LL +T LH +Y F FF
Sbjct: 1277 DFGTKCVIEEVKSSHKTLL----NTELHLTKYYGFSFF 1310
>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 497
Score = 26.6 bits (56), Expect = 4.4
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = -3
Query: 298 VKVEYIQQYVSITASGISSTMRSIGSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTE 119
V EYI++ ++ S T+ I + +Y + E + + C RNTLLS+H
Sbjct: 145 VGAEYIKKVIARLQSYDRRTLDQIAAKLYFYYILFFEKCNRSVE----C-RNTLLSVHRT 199
Query: 118 SSLR 107
+SLR
Sbjct: 200 ASLR 203
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.8
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = -1
Query: 714 PRHCHKLKFSVQKEVHEEYLTHYVDKVENFTYKESESVKVLSVQVRVEIVDK*LFTTRLA 535
P H ++ EV E ++ Y+D + + ESE VK + V ++ + L +
Sbjct: 542 PAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVK-DVLQKLKNANLIINQAK 600
Query: 534 LVFNDGTVKIQDQHLDAASF 475
F+ VK H+ F
Sbjct: 601 CEFHQSQVKFIGYHISEKGF 620
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.8
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = -1
Query: 714 PRHCHKLKFSVQKEVHEEYLTHYVDKVENFTYKESESVKVLSVQVRVEIVDK*LFTTRLA 535
P H ++ EV E ++ Y+D + + ESE VK + V ++ + L +
Sbjct: 542 PAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVK-DVLQKLKNANLIINQAK 600
Query: 534 LVFNDGTVKIQDQHLDAASF 475
F+ VK H+ F
Sbjct: 601 CEFHQSQVKFIGYHISEKGF 620
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 440 VLCSPPTCGKRGKEAASRCWSWILTVPSLKTSASRVVKSYLSTIST 577
+L PP R KE + + L VP+L S V+ Y S +T
Sbjct: 109 LLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTT 154
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +1
Query: 454 AYLWKTWEGGRIKMLVLDLNCPIVEDECKSGRKKLLVDYFHTNLHTQNF 600
A +W G +K LV +N P+ + RK LLV ++ + ++
Sbjct: 204 ARIWDVLSGQCLKTLVEPINVPLSNLQFTENRKYLLVSNLNSQIRLWDY 252
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.8
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = -1
Query: 714 PRHCHKLKFSVQKEVHEEYLTHYVDKVENFTYKESESVKVLSVQVRVEIVDK*LFTTRLA 535
P H ++ EV E ++ Y+D + + ESE VK + V ++ + L +
Sbjct: 542 PAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVK-DVLQKLKNANLIINQAK 600
Query: 534 LVFNDGTVKIQDQHLDAASF 475
F+ VK H+ F
Sbjct: 601 CEFHQSQVKFIGYHISEKGF 620
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 440 VLCSPPTCGKRGKEAASRCW 499
VL PP CG G E+ R W
Sbjct: 799 VLVYPPVCGHIGHESCLRSW 818
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,600,905
Number of Sequences: 5004
Number of extensions: 77308
Number of successful extensions: 258
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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