Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_H21
         (837 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   4.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   8.1  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    22   8.1  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 645 RSGSNILHGLLFGRRISTYGSDVVSFTEMEPEERVDPMAXV 767
           R+G N +        +S   SDVV+FTE+    R+ PM  V
Sbjct: 408 RNGENPIDTCEMFDSVSILFSDVVTFTEI--CSRITPMEVV 446


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 98  KGASQARLCVHRQQCVPLTLQSHRDYLDRVLASRHVATVHR*PD*P 235
           +  +QAR+ +     + + LQ  RD L  ++   HVA     P+ P
Sbjct: 311 RSTAQARVRMQVVSQLEIQLQKERDRLTAMMHHLHVAKQMASPEPP 356


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 436 SCFMFPAYLWKTWEGG 483
           +CF+    LW +WE G
Sbjct: 379 ACFLTRGDLWISWEEG 394


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 388 YLTSSCPSTCGPT 350
           Y+T++ PS CG T
Sbjct: 13  YITAAFPSACGKT 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,729
Number of Sequences: 438
Number of extensions: 5623
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)