Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_H18
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    34   0.022
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    29   1.1  
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    28   1.5  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    27   2.5  
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    27   3.4  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    26   7.8  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   7.8  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 34.3 bits (75), Expect = 0.022
 Identities = 32/94 (34%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
 Frame = +1

Query: 319 PASVSRYHI---TGVEESPATTT-CPLAASVAAPATWRGTNDSATEFCRRG------STP 468
           P + S Y I   T V  +P TTT C  + SV   +T   +   AT  C         STP
Sbjct: 508 PVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTP 567

Query: 469 AAYGRYQRNNSTAPYSTPPSTVERTTSHHRWYGS 570
                Y  ++ST   STP +T   TTS    Y S
Sbjct: 568 VTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTS 601



 Score = 31.5 bits (68), Expect = 0.16
 Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
 Frame = +1

Query: 337 YHITGVEESPATTT-CPLAASVAAPATWRGTNDSATEFCRRG------STPAAYGRYQRN 495
           Y  T V  +P TTT C  + S+   +T   +    T  C         STP     Y  +
Sbjct: 458 YTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTIS 517

Query: 496 NSTAPYSTPPSTVERTTSHHRWYGS 570
           +ST   STP +T   TTS    Y S
Sbjct: 518 SSTPVTSTPVTTTNCTTSTSVLYTS 542


>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +2

Query: 419 GVLMIVQLNSVDAAVRQLHME 481
           G +M+++L  +DA VRQ+HM+
Sbjct: 345 GEMMMIELEGLDAMVRQVHMQ 365


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 502 TAPYSTPPSTVERTTSHHRWYGSGE 576
           T+P  TP  T+ R++SH+ W   G+
Sbjct: 236 TSPLRTPSRTLSRSSSHYLWVRHGK 260


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +1

Query: 487 QRNNSTAPYSTPPSTVERTTSH 552
           Q NN+++ +STPP ++  T++H
Sbjct: 171 QSNNTSSQHSTPPLSISDTSTH 192


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/69 (24%), Positives = 31/69 (44%)
 Frame = +1

Query: 382 PLAASVAAPATWRGTNDSATEFCRRGSTPAAYGRYQRNNSTAPYSTPPSTVERTTSHHRW 561
           PLA         + +N+++T F         +GR ++N+   P   PP+T   + S+ + 
Sbjct: 80  PLANPPPGCPMHKASNENSTGFFSN-----LFGREKQNSEATPAVQPPATCPMSNSNQKP 134

Query: 562 YGSGEKVAG 588
            G  E + G
Sbjct: 135 AGVSEVLTG 143


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +1

Query: 388 AASVAAPATWRGTNDSATEFCRRGSTPAAYGRYQRNNSTAPYSTP 522
           A + ++P   R  + S+++F  R S+ +     +RN+ T+PYS P
Sbjct: 692 ARNFSSPPFTRPASPSSSKF--RFSSSSFQSTIRRNSLTSPYSVP 734


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 28/83 (33%), Positives = 37/83 (44%)
 Frame = +1

Query: 304 IPSLXPASVSRYHITGVEESPATTTCPLAASVAAPATWRGTNDSATEFCRRGSTPAAYGR 483
           IP+  P+SVS +  T    S  TT   L AS     T+ GT   +  F    S+P  Y  
Sbjct: 409 IPTSVPSSVSSF--TSSNSSYTTT---LTAS-NTTVTFTGTGTGSATFT---SSPPFYS- 458

Query: 484 YQRNNSTAPYSTPPSTVERTTSH 552
              N+S  P S P S    T+S+
Sbjct: 459 ---NSSVIPTSAPSSVSSFTSSN 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,165,260
Number of Sequences: 5004
Number of extensions: 59409
Number of successful extensions: 187
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)