Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_H16
         (905 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   4.6  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   4.6  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   4.6  
D38540-1|BAA07543.1|  284|Caenorhabditis elegans CeTMI protein.        29   6.0  
AL132877-1|CAC70114.1|  284|Caenorhabditis elegans Hypothetical ...    29   6.0  
AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical...    29   6.0  
AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like pro...    29   6.0  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 814 PQRGXGXPXPAAEGXPXPXPKGXPXPXAEG 903
           P    G P P   G P P P G P P   G
Sbjct: 257 PPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 286


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 814 PQRGXGXPXPAAEGXPXPXPKGXPXPXAEG 903
           P    G P P   G P P P G P P   G
Sbjct: 278 PPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 307


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 814 PQRGXGXPXPAAEGXPXPXPKGXPXPXAEG 903
           P    G P P   G P P P G P P   G
Sbjct: 263 PPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 292


>D38540-1|BAA07543.1|  284|Caenorhabditis elegans CeTMI protein.
          Length = 284

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +3

Query: 279 DDLINEIEKYNDIGDDIDDSFVEL 350
           D+L++E E+Y  I +++D +F EL
Sbjct: 258 DELVHEKERYKTISEELDSTFQEL 281


>AL132877-1|CAC70114.1|  284|Caenorhabditis elegans Hypothetical
           protein Y105E8B.1a protein.
          Length = 284

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +3

Query: 279 DDLINEIEKYNDIGDDIDDSFVEL 350
           D+L++E E+Y  I +++D +F EL
Sbjct: 258 DELVHEKERYKTISEELDSTFQEL 281


>AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical
           protein Y113G7B.23 protein.
          Length = 789

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/45 (31%), Positives = 16/45 (35%)
 Frame = +1

Query: 769 PXXRGTXXQXPMXREPQRGXGXPXPAAEGXPXPXPKGXPXPXAEG 903
           P  +      P   + QRG G P P   G P   P G   P   G
Sbjct: 713 PPYQAQPYPGPPPPQQQRGYGYPPPPQPGHPYQQPYGQMPPPPHG 757


>AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like
           protein protein.
          Length = 789

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/45 (31%), Positives = 16/45 (35%)
 Frame = +1

Query: 769 PXXRGTXXQXPMXREPQRGXGXPXPAAEGXPXPXPKGXPXPXAEG 903
           P  +      P   + QRG G P P   G P   P G   P   G
Sbjct: 713 PPYQAQPYPGPPPPQQQRGYGYPPPPQPGHPYQQPYGQMPPPPHG 757


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,112,528
Number of Sequences: 27780
Number of extensions: 224669
Number of successful extensions: 831
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)