Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_H14
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    29   1.1  
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    28   1.9  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    27   3.3  
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|...    27   3.3  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    27   4.4  
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|...    27   4.4  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   7.6  
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    26   7.6  

>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 21/76 (27%), Positives = 29/76 (38%)
 Frame = +2

Query: 182 PVRPARDAKRWREFSPIAPNPPARKWTPERTTGPGLRSQPRGLRGFVQRKLRLPRLTDRS 361
           P++P R   R R        P   + T +     GL  +P  + GF +    L  L  + 
Sbjct: 144 PLKPKRGRGRPRLHPLPVVQPSVDEGTTQNNLQMGL-DEPNIIEGFAEGHANLSELKPKR 202

Query: 362 GPPRPRKKVRSESDRS 409
           G  RPRK    E   S
Sbjct: 203 GRGRPRKIKPEEGSSS 218


>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 161 LPPLSARPVRPARDAKRWREFSPIAPNPPARK 256
           L P+  +P +P++  K+     P+ P PP+R+
Sbjct: 152 LTPVPKKPSKPSKPRKKVPVSHPLPPTPPSRE 183


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 615 CVSRRPWLQQLSSCVRLLGLPLLQSHPFQQSRAEVPPITSCTMGXLN 755
           C+   P  Q  S  + L  + LLQSH F +   ++ P T  T G L+
Sbjct: 634 CIPLVPAYQACS--INLTKILLLQSHEFSKFLGDIKPDTERTTGLLD 678


>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 26/90 (28%), Positives = 33/90 (36%)
 Frame = +2

Query: 167 PLSARPVRPARDAKRWREFSPIAPNPPARKWTPERTTGPGLRSQPRGLRGFVQRKLRLPR 346
           P    P    R  K  +E   +  +  A    P        RS P+   G +   LR   
Sbjct: 52  PYGMGPRAMKRREKAEKEKLGVVNDELAESSKPSSGAATPTRSAPKSSAGLINSGLRA-- 109

Query: 347 LTDRSGPPRPRKKVRSESDRSISEAQDKRP 436
             DRSG P  R + +  S RSIS    K P
Sbjct: 110 -LDRSGKPCRRWEKKPISIRSISTIVWKLP 138


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -3

Query: 316 SSESPGLRPKAWAGRPFRSPFPGRWVGSDGR 224
           +SE PGLRP     +P R  F  R  G  GR
Sbjct: 316 NSEMPGLRPSDMPSKPIRG-FCQRLKGKQGR 345


>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 347

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +2

Query: 293 SQPRGLRGFVQRKLRLPRLTDRSGPPRPRKKVRS 394
           SQ   L  F  R LR P LT  S  P P   +RS
Sbjct: 223 SQDSSLSVFDVRYLRTPMLTKTSSRPDPNGSIRS 256


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = +2

Query: 206  KRWREFSPIAPNPPARKWTPERTTGPGLRSQPRGLRGFVQRKLRLPRLTDRSGPPRPRKK 385
            ++  E  PIAPNPP      + T  P    + R +   V   L LP       PP+   +
Sbjct: 1235 QKLHECVPIAPNPPPIIGESKSTRKPRPTKRQRQIMKQVAEGL-LP--ASAIAPPKSSNE 1291

Query: 386  VRSESDRSISEAQDK 430
             +S ++    EA+ K
Sbjct: 1292 KKSSNNVKAVEAETK 1306


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +2

Query: 290 RSQPRGLRGFVQRKLRLPRLTDRSGPPRPRKKVRSESDRSISEAQDKRPRIGPSSKS 460
           R + +GL    + K  +  L D     + RK+ R    + I    D   RI  SSKS
Sbjct: 129 RQKDQGLNVRTRAKELVELLNDSERIRKERKRARQNRGKFIGVGSDGDSRISTSSKS 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,352,693
Number of Sequences: 5004
Number of extensions: 71933
Number of successful extensions: 216
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)