Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_H13
(864 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 38 0.001
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.069
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.091
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.21
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.64
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.64
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 28 2.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 22 5.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 6.0
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/59 (33%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Frame = +2
Query: 608 PXXXXPXXXXXXXPPQ--APXPRPPXXXXPXPPXXGXXXPXPPXTPPXXXPXPXXPRAP 778
P P PPQ AP P PP P PP PP PP P P P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = +2
Query: 647 PPQAPXPR-PPXXXXPXPPXXGXXXPXPPXTPPXXXPXPXXPRAPXAXXPP 796
PP P PP P PP P PP PP P P + PP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPM-------PAGPPSAPPP 1733
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.7 bits (71), Expect = 0.069
Identities = 16/54 (29%), Positives = 18/54 (33%)
Frame = +2
Query: 653 QAPXPRPPXXXXPXPPXXGXXXPXPPXTPPXXXPXPXXPRAPXAXXPPXXXXPP 814
++P P PP P P P P P P P A PP PP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.9 bits (64), Expect = 0.49
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +2
Query: 647 PPQAPXPRPPXXXXPXPPXXGXXXPXPPXTPP 742
PP AP P P P G P PP PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/50 (32%), Positives = 16/50 (32%), Gaps = 3/50 (6%)
Frame = +2
Query: 719 PXPPXT---PPXXXPXPXXPRAPXAXXPPXXXXPPDXXXXTXXPXPXXRP 859
P PP P P P P AP PP PP P P P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.091
Identities = 18/58 (31%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Frame = +2
Query: 647 PPQAPXPRPPXXXXPXPPXXGXXXPXPPXTPPXXXPXPXXPRAPXA--XXPPXXXXPP 814
PP P PP PP P P PP P P A PP PP
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Score = 29.5 bits (63), Expect = 0.64
Identities = 19/73 (26%), Positives = 19/73 (26%)
Frame = +2
Query: 596 RXXXPXXXXPXXXXXXXPPQAPXPRPPXXXXPXPPXXGXXXPXPPXTPPXXXPXPXXPRA 775
R P P PP P PP P P P PP P P
Sbjct: 411 RTSTPPVPTPPSLPPSAPPSLPPSAPPSLPM-GAPAAPPLPPSAPIAPPLPAGMPAAPPL 469
Query: 776 PXAXXPPXXXXPP 814
P A P P
Sbjct: 470 PPAAPAPPPAPAP 482
Score = 29.1 bits (62), Expect = 0.85
Identities = 17/49 (34%), Positives = 17/49 (34%)
Frame = +2
Query: 647 PPQAPXPRPPXXXXPXPPXXGXXXPXPPXTPPXXXPXPXXPRAPXAXXP 793
PP AP P P P P P PP P P P A A P
Sbjct: 450 PPSAPIAPPLPAGMPAAP---PLPPAAPAPPPAPAPAPAAPVASIAELP 495
Score = 27.5 bits (58), Expect = 2.6
Identities = 19/68 (27%), Positives = 19/68 (27%), Gaps = 1/68 (1%)
Frame = +2
Query: 647 PPQAPXPRPPXXXXPXPPXXGXXXP-XPPXTPPXXXPXPXXPRAPXAXXPPXXXXPPDXX 823
P P PP PP P P PP P P P A P PP
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP-AGMPAAPPLPPAAP 474
Query: 824 XXTXXPXP 847
P P
Sbjct: 475 APPPAPAP 482
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/48 (33%), Positives = 17/48 (35%)
Frame = +2
Query: 650 PQAPXPRPPXXXXPXPPXXGXXXPXPPXTPPXXXPXPXXPRAPXAXXP 793
P AP P P P P G TPP P P AP + P
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTS--TPPVPTPPSLPPSAPPSLPP 433
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/56 (25%), Positives = 14/56 (25%)
Frame = +2
Query: 647 PPQAPXPRPPXXXXPXPPXXGXXXPXPPXTPPXXXPXPXXPRAPXAXXPPXXXXPP 814
PP P P PP P PP P P P PP
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPP 416
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.1 bits (67), Expect = 0.21
Identities = 17/57 (29%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Frame = +2
Query: 647 PPQAPXPRPPXXXXPXPPXXGXXXPXPPXTPPXXXPXP-XXPRAPXAXXPPXXXXPP 814
PP AP P P P PP +P P P P P + PP P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP 180
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/56 (30%), Positives = 18/56 (32%)
Frame = +2
Query: 647 PPQAPXPRPPXXXXPXPPXXGXXXPXPPXTPPXXXPXPXXPRAPXAXXPPXXXXPP 814
PP +P PP PP P P P P P P A P PP
Sbjct: 150 PPPSPASAPP-IPSKAPPIPSSLPPPAQPAAPVKSP-PSAPSLPSAVPPMPPKVPP 203
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 29.5 bits (63), Expect = 0.64
Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Frame = +2
Query: 650 PQAPXPR-PPXXXXPXPPXXGXXXPXPPXTPPXXXPXPXXPRAPXAXXP 793
P+ P PR PP P P P P P P P P P P
Sbjct: 99 PEEPLPREPPLPNEPVPEEPLPGEPPLPDEPVPEEPLPGEPPLPNEPVP 147
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.64
Identities = 17/69 (24%), Positives = 17/69 (24%)
Frame = +2
Query: 608 PXXXXPXXXXXXXPPQAPXPRPPXXXXPXPPXXGXXXPXPPXTPPXXXPXPXXPRAPXAX 787
P P P P P PP PP PP P P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209
Query: 788 XPPXXXXPP 814
PP PP
Sbjct: 1210 VPPPSTAPP 1218
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/68 (23%), Positives = 16/68 (23%)
Frame = +2
Query: 608 PXXXXPXXXXXXXPPQAPXPRPPXXXXPXPPXXGXXXPXPPXTPPXXXPXPXXPRAPXAX 787
P P P P P P P P P PP P P P
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPS 1214
Query: 788 XPPXXXXP 811
P P
Sbjct: 1215 TAPPVPTP 1222
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/55 (29%), Positives = 16/55 (29%)
Frame = +2
Query: 647 PPQAPXPRPPXXXXPXPPXXGXXXPXPPXTPPXXXPXPXXPRAPXAXXPPXXXXP 811
P AP PP P P P P PP P P P P P
Sbjct: 1113 PVPAPSGAPPV---PKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKP 1164
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/54 (25%), Positives = 14/54 (25%)
Frame = +2
Query: 650 PQAPXPRPPXXXXPXPPXXGXXXPXPPXTPPXXXPXPXXPRAPXAXXPPXXXXP 811
P P P P P P P PP P P P P P
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKP 1145
Score = 26.6 bits (56), Expect = 4.5
Identities = 19/81 (23%), Positives = 21/81 (25%), Gaps = 1/81 (1%)
Frame = +2
Query: 608 PXXXXPXXXXXXXPPQAPXPRPPXXXXPXPPXXGXXXPXPPXTPPXXXPXPXXPRAPXAX 787
P P P + P P PP PP P P P +
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Query: 788 XP-PXXXXPPDXXXXTXXPXP 847
P P PP T P P
Sbjct: 1200 VPKPSVGVPPVPPPSTAPPVP 1220
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.9 bits (59), Expect = 2.0
Identities = 21/55 (38%), Positives = 22/55 (40%)
Frame = -1
Query: 810 GXXXXGGXXAXGARGXXGXGXXXGGVXGGXGXXXPXXGGXGXXXXGGRGXGAXGG 646
G G G RG G G G GG G GG G GGRG G+ GG
Sbjct: 12 GGSRGGRGGFNGGRGGFGGGRG-GARGGGRGGARGGRGGRGGAR-GGRG-GSSGG 63
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 22.2 bits (45), Expect(2) = 5.4
Identities = 11/32 (34%), Positives = 12/32 (37%)
Frame = +2
Query: 647 PPQAPXPRPPXXXXPXPPXXGXXXPXPPXTPP 742
PP P +PP P P PP PP
Sbjct: 167 PP--PSFQPPSAAAPATSLPSDYNPPPPPPPP 196
Score = 22.2 bits (45), Expect(2) = 5.4
Identities = 9/24 (37%), Positives = 9/24 (37%)
Frame = +2
Query: 725 PPXTPPXXXPXPXXPRAPXAXXPP 796
P TP P P P P PP
Sbjct: 225 PTYTPKQADPLPAPPPPPPPTLPP 248
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +2
Query: 671 PPXXXXPXPPXXGXXXPXPPXTPP 742
PP P PP G P P PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,455,167
Number of Sequences: 5004
Number of extensions: 23097
Number of successful extensions: 169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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