Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_H13
         (864 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.39 
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    25   0.68 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   3.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.39
 Identities = 17/53 (32%), Positives = 19/53 (35%)
 Frame = +2

Query: 656 APXPRPPXXXXPXPPXXGXXXPXPPXTPPXXXPXPXXPRAPXAXXPPXXXXPP 814
           AP P+P     P  P  G   P P   PP   P    P AP +  P      P
Sbjct: 20  APGPQPSPHQSPQAPQRG-SPPNPSQGPPPGGP----PGAPPSQNPSQMMISP 67



 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/36 (30%), Positives = 12/36 (33%)
 Frame = +2

Query: 647 PPQAPXPRPPXXXXPXPPXXGXXXPXPPXTPPXXXP 754
           P     P+ P    P  P  G     PP  PP   P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 14/46 (30%), Positives = 14/46 (30%)
 Frame = +2

Query: 647 PPQAPXPRPPXXXXPXPPXXGXXXPXPPXTPPXXXPXPXXPRAPXA 784
           P   P PRPP       P        P   P    P P   R P A
Sbjct: 103 PVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEA 148


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 1   YWFSLQT-SFNYLCSSQFIWSSYI*NNTNNQYLHEFLY 111
           Y+ +L + + NY+ + QF+ S Y  NN + Q     L+
Sbjct: 264 YYSALSSHNLNYVNTEQFVKSQYQANNVHYQGKENILW 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,256
Number of Sequences: 438
Number of extensions: 3308
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)