Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_H12
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    32   0.12 
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    29   0.64 
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    29   0.84 
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    29   1.1  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    27   4.5  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    27   4.5  
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    26   6.0  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 27/125 (21%), Positives = 44/125 (35%), Gaps = 7/125 (5%)
 Frame = +2

Query: 26   PGHGDPKVPSEPTLPLIDGFPMQPDATGPSISGYTTAAGSGPTFQHGYWTAPQAD----- 190
            P H +P  P  P  P+     +      P  + YT  A +  T    +   P        
Sbjct: 951  PSHPNPYTPVAPQSPVAAASRISSSPNMPPSNPYTPIAVASSTVNPAHTYKPHGGSQIVP 1010

Query: 191  --QQTSNRSTSQNRDRRSKSKNKEHNKTRIPRPQRDKPGINPVIPPAMPGIGMPTIDAAK 364
              +Q +NR          ++   E     +P P    P + P +PP      +P + +A 
Sbjct: 1011 PPKQPANRVVPLPPTASQRASAYEPPTVSVPSPSALSPSVTPQLPPV--SSRLPPV-SAT 1067

Query: 365  RRQLP 379
            R Q+P
Sbjct: 1068 RPQIP 1072


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +2

Query: 188 DQQTSNRSTSQNRDRRSKSKNKEHNKTRIPRPQRDKPGINPVIPPAMPGIG 340
           +Q TSN   S+   ++ KS++     T  P     +    P++PP  P  G
Sbjct: 156 EQPTSNAVVSEVNPQQQKSQDSSSFVTEKPASSEKEDKEKPLVPPGAPRFG 206


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +2

Query: 92  QPDATGPSISGYTTAAGSGPTFQHGYWTAPQADQQTSNRSTSQNRDRRSKSKNKEH--NK 265
           +P++T  + S +T+A  S    ++  W++P A      + +S+   ++S ++ KEH   K
Sbjct: 89  KPNSTS-NPSKHTSAYASYNKGKNSKWSSPFASTTKKPQESSEKYSKKSSTRKKEHFNKK 147

Query: 266 TRIPR 280
              PR
Sbjct: 148 PSFPR 152


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 12/128 (9%)
 Frame = +2

Query: 17  GVWPGHGDPKVPSEPTLPLIDGFPMQPDATGPSISGYTTAAGSGPTFQHGYWTAPQADQQ 196
           G     G    P  PT+ +    P     T P+ S +   + + P F +   + P     
Sbjct: 341 GTGSSAGKTNPPVNPTIKVTAAIPSPLQNTNPAPSTFPNPSVASPAFPNSSTSNPSTAPA 400

Query: 197 TSN------RSTSQNRDRRSKSKNKEHNKTRIPRPQ--RDKPGI----NPVIPPAMPGIG 340
           +++      + ++ N    S S +  + +T  P      +KP +     PV+ P +P I 
Sbjct: 401 SASPLASTLKPSTANDTNGSSSSSSSNPRTSSPLASNAENKPPVAQQSPPVLLPTLPPIQ 460

Query: 341 MPTIDAAK 364
             TI  ++
Sbjct: 461 TTTIQTSR 468


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
 Frame = +2

Query: 23  WPGHGDPKVPSEPTLPLIDGFPMQPDATGP---SISGYTTAAGSGPTFQHGYWTAPQADQ 193
           W G+    + ++  L  I+   + P  T P         T     P+F   +++  Q+  
Sbjct: 56  WCGNQSTPIATKSHLSCINPQYVNPFDTSPVSVDTEFQDTYLLDAPSFAQPHFSERQSVD 115

Query: 194 QTSNRSTSQNRDRRSKSKNKEHNKTRI 274
           +T +R  S+NR RR +  N   N  R+
Sbjct: 116 KTRSRCLSRNR-RRKRHPNLHKNHQRL 141


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 8   NGDGVWPGHGDPKVPSEPTLP-LIDGFPMQPDATGPSISGY 127
           NG  +   +G+P + SE  +P L+D    Q D + PS  G+
Sbjct: 508 NGSSIKGQNGEPALKSEIVMPVLLDSTGNQIDVSHPSEKGW 548


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/39 (23%), Positives = 24/39 (61%)
 Frame = +2

Query: 188 DQQTSNRSTSQNRDRRSKSKNKEHNKTRIPRPQRDKPGI 304
           +  +S     ++ +RR K+   E+ ++R+P  ++++PG+
Sbjct: 117 NNSSSKDKIDRHPERRFKAALTEYKQSRLPELRKEQPGL 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,765
Number of Sequences: 5004
Number of extensions: 51909
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)