Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_H12
(857 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361 32 0.51
05_01_0538 + 4646772-4647059,4647462-4647542,4647819-4647890,464... 32 0.67
07_03_1090 + 23891294-23892222,23892317-23892516,23895241-238954... 31 1.2
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 31 1.6
01_01_0207 - 1773790-1774215,1775428-1775888,1776177-1776455,177... 30 2.1
11_04_0158 + 14207463-14207629,14207724-14207774,14207874-142080... 29 3.6
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 29 3.6
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511... 29 3.6
12_01_0425 + 3347804-3348284,3348544-3348759,3349038-3349588,334... 29 4.7
03_05_0324 - 23121401-23121465,23121507-23122059 29 4.7
07_01_1105 - 10173039-10173156,10173715-10173716,10174550-101745... 28 8.3
03_06_0187 + 32209924-32210634 28 8.3
03_01_0575 + 4247431-4247489,4248475-4248547,4248792-4249229,425... 28 8.3
01_05_0388 - 21712266-21712715 28 8.3
>09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361
Length = 504
Score = 32.3 bits (70), Expect = 0.51
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +2
Query: 23 WPGHGDPKVPSEPTLPLIDGFPMQPDATGPSISGYTTAAGS 145
WPG G P +PS F M P PS Y AG+
Sbjct: 255 WPGAGAPSMPSPKAAAFRGRFDMAPSPPPPSYDHYRGGAGA 295
>05_01_0538 +
4646772-4647059,4647462-4647542,4647819-4647890,
4648458-4649321
Length = 434
Score = 31.9 bits (69), Expect = 0.67
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 143 SGPTFQHGYWTAPQADQQTSNRSTSQNRDRRSKSKNKEHNKTRIPRPQRDK 295
S P+ + G P D+ + +RS S++ DR S ++++H+ RP D+
Sbjct: 237 SSPSRRSGSREVPDRDRSSRDRS-SRDYDRSSHDRDRDHSSRDYDRPSHDR 286
>07_03_1090 +
23891294-23892222,23892317-23892516,23895241-23895482,
23895771-23896461,23896486-23896562
Length = 712
Score = 31.1 bits (67), Expect = 1.2
Identities = 27/97 (27%), Positives = 40/97 (41%)
Frame = +2
Query: 41 PKVPSEPTLPLIDGFPMQPDATGPSISGYTTAAGSGPTFQHGYWTAPQADQQTSNRSTSQ 220
P + P L + P P + P ++ TT + Q Y+TAP+ + +RSTSQ
Sbjct: 139 PDLRPLPPLKRPESQPPPPPPSTPPLT--TTGYSTDEEDQATYYTAPKTAMSSFSRSTSQ 196
Query: 221 NRDRRSKSKNKEHNKTRIPRPQRDKPGINPVIPPAMP 331
+ S + P P + P PV PP P
Sbjct: 197 H----STLEQTAMPPMAAPAPPQTNPP-RPVRPPPPP 228
>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 30.7 bits (66), Expect = 1.6
Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 6/120 (5%)
Frame = +2
Query: 38 DPKVPSEPTLPLIDGFPMQPDATGPSISGYTT----AAGSGPTFQHGYWTAP--QADQQT 199
+P +P P+ P + GP + +T S + +HG P + Q
Sbjct: 1264 EPPLPPPPSKPSFQNGVVDYKLNGPMSASHTPNGFMEGKSSTSSEHGSGMPPIPPSQNQF 1323
Query: 200 SNRSTSQNRDRRSKSKNKEHNKTRIPRPQRDKPGINPVIPPAMPGIGMPTIDAAKRRQLP 379
S R R R + NK +P +KP + V PP+ +PT Q+P
Sbjct: 1324 SARGRMGVRSRYVDTFNKGGGGGAVP--SYNKPAVASVTPPSGAKFFVPTAAVVAAEQMP 1381
>01_01_0207 -
1773790-1774215,1775428-1775888,1776177-1776455,
1776601-1776724,1776811-1777020
Length = 499
Score = 30.3 bits (65), Expect = 2.1
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Frame = +2
Query: 2 TGNGDGVWPGHGDPKVPSEPTLPLIDGFPMQP-DATGPSISGYT-----TAAGSGPTFQH 163
+G GDG G+ ++ P P+ F + DA +S Y + +GPT
Sbjct: 84 SGGGDGTASDGGENELHEVPKNPMATRFAFRATDANATPVSTYRGMLSRSRKNAGPTRFV 143
Query: 164 GYWTAPQADQQTSNRSTSQNRDRRSKSKN 250
P AD +T STS + +S +N
Sbjct: 144 SAGAPPSADPETPALSTSSSELVKSSPEN 172
>11_04_0158 +
14207463-14207629,14207724-14207774,14207874-14208002,
14209342-14209447,14209491-14209601,14210042-14210098,
14210903-14211727
Length = 481
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/55 (34%), Positives = 23/55 (41%)
Frame = +2
Query: 23 WPGHGDPKVPSEPTLPLIDGFPMQPDATGPSISGYTTAAGSGPTFQHGYWTAPQA 187
WPGH P++P + PL FP P A PS G G H + P A
Sbjct: 265 WPGHAPPQLPPGAS-PL---FPPGPAAFHPSSRPMPPFPGGGKDESHLFHLPPAA 315
>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 29.5 bits (63), Expect = 3.6
Identities = 26/100 (26%), Positives = 35/100 (35%), Gaps = 5/100 (5%)
Frame = +2
Query: 26 PGHGDPKV---PSEPTLPLIDGFPMQPDATGPSISG--YTTAAGSGPTFQHGYWTAPQAD 190
PG P PS P+ P + P PS S T G P HG AP+A
Sbjct: 1152 PGSSPPPASPPPSTPSAPPTNSSGSAPSPPSPSQSAPPANTGGGGSPPPSHGSPPAPKAV 1211
Query: 191 QQTSNRSTSQNRDRRSKSKNKEHNKTRIPRPQRDKPGINP 310
Q S + S S + + + R + + G P
Sbjct: 1212 QSQPAPKRSGDGGSSSDSGSSKEGGSSSDRGKSESNGNRP 1251
>01_01_0668 -
5109476-5110112,5110196-5110439,5110519-5110917,
5111390-5111668,5111886-5112257,5112371-5112475,
5112832-5112909,5112990-5113199,5113287-5113406,
5113508-5113606,5113685-5113750,5113914-5114141,
5114216-5114521,5115324-5115381
Length = 1066
Score = 29.5 bits (63), Expect = 3.6
Identities = 25/100 (25%), Positives = 36/100 (36%)
Frame = +2
Query: 41 PKVPSEPTLPLIDGFPMQPDATGPSISGYTTAAGSGPTFQHGYWTAPQADQQTSNRSTSQ 220
P VP + D P A P+ S G P AP + +
Sbjct: 308 PAVPKNGSSVSHDRPPSTVAAPKPATSSRYHGRGGAPKKGEHLPFAPSYPPSHAQGPENS 367
Query: 221 NRDRRSKSKNKEHNKTRIPRPQRDKPGINPVIPPAMPGIG 340
R+S +K ++H+ P P P I+P +PP P G
Sbjct: 368 RAPRQSGAKRQKHHA---PPPMFRGPHISPTMPPIPPQPG 404
>12_01_0425 +
3347804-3348284,3348544-3348759,3349038-3349588,
3349752-3349815,3349915-3349975,3350271-3350409,
3350561-3350677,3350794-3350971,3351218-3351828
Length = 805
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 35 GDPKVPSEPTLPLIDGFPMQPDATGPSISGYTTA-AGSGPTFQHGYWTAPQADQQTSNRS 211
G P PS+ + + P T P++ + GS P+ Q+G + P AD+ +NR+
Sbjct: 456 GQP-TPSQSNMVMQPALVTNPFGTLPAMPQMSIGNGGSAPSVQYGISSLPVADKPLTNRT 514
Query: 212 T 214
+
Sbjct: 515 S 515
>03_05_0324 - 23121401-23121465,23121507-23122059
Length = 205
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +2
Query: 83 FPMQPDATGPSISGYTTAAGSGPTFQHGYWTAPQADQQTSNRSTSQNRDRRSKS--KNKE 256
+ P +TGPSI+G + P +A+ TS S + +KS +K+
Sbjct: 78 YTTMPISTGPSITGSENGVVTTPVDSMSKDPPAEAENGTSTTSGPEKDPNAAKSCPPDKK 137
Query: 257 HNKTRI 274
H TRI
Sbjct: 138 HEPTRI 143
>07_01_1105 -
10173039-10173156,10173715-10173716,10174550-10174584,
10174696-10174765,10175163-10176707,10176770-10178062
Length = 1020
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 335 IGMPTIDAAKRRQLPAWIREGLEKMERE 418
IG+ +DAA+ + W +EGL+K+ E
Sbjct: 720 IGLSNLDAAQAANVNLWKKEGLQKLTLE 747
>03_06_0187 + 32209924-32210634
Length = 236
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +2
Query: 41 PKVPSEPTLPLIDGFPMQPDATGPSISGYTTAAG---SGPT 154
P +P+ PT+P I G P A GP+I T G GPT
Sbjct: 67 PTIPTIPTVPTIPGVP----AVGPTIPAIPTIPGVPAVGPT 103
>03_01_0575 +
4247431-4247489,4248475-4248547,4248792-4249229,
4252122-4253339
Length = 595
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +2
Query: 164 GYWTAPQADQQTSNRSTSQNRDRRSKSKNKEHNKTRIPRPQRD--KPGINPVIPPAMPGI 337
GYW++ + + S S + +K K + + R Q +N + P+ P
Sbjct: 18 GYWSSYYCYKVSDQLSQSCGHEFAMLAKVKVKEEAAMAREQALLLTEIVNRGVEPSGPDA 77
Query: 338 GMPTIDAAKRRQLPAWIR 391
G PT RR+LP +++
Sbjct: 78 GSPTFSVRVRRRLPDFLQ 95
>01_05_0388 - 21712266-21712715
Length = 149
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +2
Query: 107 GPSISGYTTAAGSGPTFQHGYWTAPQADQQTSNRSTSQNRDRRSKSKNK 253
G S Y G G + + GYW + +++ + ++ ++ +RSKSK +
Sbjct: 51 GASSYQYQYEYGGGGSGKVGYWGSVAEEERGTGQAAAEAAAKRSKSKRR 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,461,313
Number of Sequences: 37544
Number of extensions: 399651
Number of successful extensions: 1526
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1525
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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