Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_H12
(857 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC064640-1|AAH64640.1| 269|Homo sapiens SFRS18 protein protein. 54 7e-07
BC064413-1|AAH64413.1| 274|Homo sapiens SFRS18 protein protein. 54 7e-07
BC052638-1|AAH52638.1| 256|Homo sapiens SFRS18 protein protein. 54 7e-07
BC042850-1|AAH42850.1| 269|Homo sapiens SFRS18 protein protein. 54 7e-07
BC019074-1|AAH19074.1| 270|Homo sapiens C6orf111 protein protein. 54 7e-07
BC012780-1|AAH12780.1| 504|Homo sapiens C6orf111 protein protein. 54 7e-07
BC007791-1|AAH07791.1| 257|Homo sapiens C6orf111 protein protein. 54 7e-07
AL513550-4|CAI17194.1| 805|Homo sapiens RP11-98I9.2 protein. 54 7e-07
AK074628-1|BAC11098.1| 520|Homo sapiens protein ( Homo sapiens ... 54 7e-07
AK027898-1|BAB55440.1| 499|Homo sapiens protein ( Homo sapiens ... 54 7e-07
AK027759-1|BAB55350.1| 264|Homo sapiens protein ( Homo sapiens ... 54 7e-07
AK027658-1|BAB55273.1| 413|Homo sapiens protein ( Homo sapiens ... 54 7e-07
AF314186-1|AAL76165.1| 500|Homo sapiens SR rich protein protein. 54 7e-07
AF314184-1|AAL76163.1| 805|Homo sapiens SR rich protein protein. 54 7e-07
Y17397-1|CAA76763.1| 1690|Homo sapiens collagen alpha 4 type IV ... 37 0.082
X81053-1|CAA56943.1| 1690|Homo sapiens type IV collagen alpha 4 ... 37 0.082
D17391-1|BAA04214.1| 472|Homo sapiens alpha 4(IV) collagen prot... 37 0.082
AC073149-2|AAY24061.1| 365|Homo sapiens unknown protein. 37 0.082
BC099645-1|AAH99645.1| 657|Homo sapiens COL8A2 protein protein. 32 2.3
BC096297-1|AAH96297.1| 657|Homo sapiens COL8A2 protein protein. 32 2.3
AL138787-1|CAI22267.1| 703|Homo sapiens collagen type VIII alph... 32 2.3
AK074129-1|BAB84955.1| 705|Homo sapiens FLJ00201 protein protein. 32 2.3
J04177-1|AAA51891.1| 1806|Homo sapiens COL11A1 protein. 31 4.1
X57010-1|CAA40330.1| 243|Homo sapiens collagen II alpha 1 chain... 30 9.4
X16711-1|CAA34683.1| 1160|Homo sapiens COL2A1 protein. 30 9.4
X16468-1|CAA34488.1| 1418|Homo sapiens protein ( Human mRNA for ... 30 9.4
U76604-1|AAB51499.1| 1497|Homo sapiens 180 kDa bullous pemphigoi... 30 9.4
M91669-1|AAA35605.1| 1532|Homo sapiens autoantigen protein. 30 9.4
M63730-1|AAA51839.1| 349|Homo sapiens BPAG2 protein. 30 9.4
M60832-1|AAA62822.1| 635|Homo sapiens alpha-2 type VIII collage... 30 9.4
L10347-1|AAC41772.1| 1487|Homo sapiens alpha-1 type II collagen ... 30 9.4
BC116449-1|AAI16450.1| 1487|Homo sapiens collagen, type II, alph... 30 9.4
AL138761-5|CAC00589.1| 1497|Homo sapiens collagen type XVII alph... 30 9.4
AL138761-4|CAI12398.1| 1415|Homo sapiens collagen type XVII alph... 30 9.4
AJ245433-1|CAB51603.1| 312|Homo sapiens G4 protein protein. 30 9.4
>BC064640-1|AAH64640.1| 269|Homo sapiens SFRS18 protein protein.
Length = 269
Score = 54.0 bits (124), Expect = 7e-07
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = +2
Query: 344 PTIDAAKRRQLPAWIREGLEKMEREKQ 424
P IDA KRR LPAWIREGLEKMEREKQ
Sbjct: 222 PQIDAVKRRTLPAWIREGLEKMEREKQ 248
>BC064413-1|AAH64413.1| 274|Homo sapiens SFRS18 protein protein.
Length = 274
Score = 54.0 bits (124), Expect = 7e-07
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = +2
Query: 344 PTIDAAKRRQLPAWIREGLEKMEREKQ 424
P IDA KRR LPAWIREGLEKMEREKQ
Sbjct: 222 PQIDAVKRRTLPAWIREGLEKMEREKQ 248
>BC052638-1|AAH52638.1| 256|Homo sapiens SFRS18 protein protein.
Length = 256
Score = 54.0 bits (124), Expect = 7e-07
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = +2
Query: 344 PTIDAAKRRQLPAWIREGLEKMEREKQ 424
P IDA KRR LPAWIREGLEKMEREKQ
Sbjct: 222 PQIDAVKRRTLPAWIREGLEKMEREKQ 248
>BC042850-1|AAH42850.1| 269|Homo sapiens SFRS18 protein protein.
Length = 269
Score = 54.0 bits (124), Expect = 7e-07
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = +2
Query: 344 PTIDAAKRRQLPAWIREGLEKMEREKQ 424
P IDA KRR LPAWIREGLEKMEREKQ
Sbjct: 222 PQIDAVKRRTLPAWIREGLEKMEREKQ 248
>BC019074-1|AAH19074.1| 270|Homo sapiens C6orf111 protein protein.
Length = 270
Score = 54.0 bits (124), Expect = 7e-07
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = +2
Query: 344 PTIDAAKRRQLPAWIREGLEKMEREKQ 424
P IDA KRR LPAWIREGLEKMEREKQ
Sbjct: 222 PQIDAVKRRTLPAWIREGLEKMEREKQ 248
>BC012780-1|AAH12780.1| 504|Homo sapiens C6orf111 protein protein.
Length = 504
Score = 54.0 bits (124), Expect = 7e-07
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = +2
Query: 344 PTIDAAKRRQLPAWIREGLEKMEREKQ 424
P IDA KRR LPAWIREGLEKMEREKQ
Sbjct: 222 PQIDAVKRRTLPAWIREGLEKMEREKQ 248
>BC007791-1|AAH07791.1| 257|Homo sapiens C6orf111 protein protein.
Length = 257
Score = 54.0 bits (124), Expect = 7e-07
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = +2
Query: 344 PTIDAAKRRQLPAWIREGLEKMEREKQ 424
P IDA KRR LPAWIREGLEKMEREKQ
Sbjct: 222 PQIDAVKRRTLPAWIREGLEKMEREKQ 248
>AL513550-4|CAI17194.1| 805|Homo sapiens RP11-98I9.2 protein.
Length = 805
Score = 54.0 bits (124), Expect = 7e-07
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = +2
Query: 344 PTIDAAKRRQLPAWIREGLEKMEREKQ 424
P IDA KRR LPAWIREGLEKMEREKQ
Sbjct: 222 PQIDAVKRRTLPAWIREGLEKMEREKQ 248
>AK074628-1|BAC11098.1| 520|Homo sapiens protein ( Homo sapiens
cDNA FLJ90147 fis, clone HEMBB1001847, weakly similar to
NEUROGENIC PROTEIN BIG BRAIN. ).
Length = 520
Score = 54.0 bits (124), Expect = 7e-07
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = +2
Query: 344 PTIDAAKRRQLPAWIREGLEKMEREKQ 424
P IDA KRR LPAWIREGLEKMEREKQ
Sbjct: 222 PQIDAVKRRTLPAWIREGLEKMEREKQ 248
>AK027898-1|BAB55440.1| 499|Homo sapiens protein ( Homo sapiens
cDNA FLJ14992 fis, clone Y79AA1001805. ).
Length = 499
Score = 54.0 bits (124), Expect = 7e-07
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = +2
Query: 344 PTIDAAKRRQLPAWIREGLEKMEREKQ 424
P IDA KRR LPAWIREGLEKMEREKQ
Sbjct: 222 PQIDAVKRRTLPAWIREGLEKMEREKQ 248
>AK027759-1|BAB55350.1| 264|Homo sapiens protein ( Homo sapiens
cDNA FLJ14853 fis, clone PLACE1000793, weakly similar to
NEUROGENIC PROTEIN BIG BRAIN. ).
Length = 264
Score = 54.0 bits (124), Expect = 7e-07
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = +2
Query: 344 PTIDAAKRRQLPAWIREGLEKMEREKQ 424
P IDA KRR LPAWIREGLEKMEREKQ
Sbjct: 222 PQIDAVKRRTLPAWIREGLEKMEREKQ 248
>AK027658-1|BAB55273.1| 413|Homo sapiens protein ( Homo sapiens
cDNA FLJ14752 fis, clone NT2RP3003071. ).
Length = 413
Score = 54.0 bits (124), Expect = 7e-07
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = +2
Query: 344 PTIDAAKRRQLPAWIREGLEKMEREKQ 424
P IDA KRR LPAWIREGLEKMEREKQ
Sbjct: 222 PQIDAVKRRTLPAWIREGLEKMEREKQ 248
>AF314186-1|AAL76165.1| 500|Homo sapiens SR rich protein protein.
Length = 500
Score = 54.0 bits (124), Expect = 7e-07
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = +2
Query: 344 PTIDAAKRRQLPAWIREGLEKMEREKQ 424
P IDA KRR LPAWIREGLEKMEREKQ
Sbjct: 222 PQIDAVKRRTLPAWIREGLEKMEREKQ 248
>AF314184-1|AAL76163.1| 805|Homo sapiens SR rich protein protein.
Length = 805
Score = 54.0 bits (124), Expect = 7e-07
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = +2
Query: 344 PTIDAAKRRQLPAWIREGLEKMEREKQ 424
P IDA KRR LPAWIREGLEKMEREKQ
Sbjct: 222 PQIDAVKRRTLPAWIREGLEKMEREKQ 248
>Y17397-1|CAA76763.1| 1690|Homo sapiens collagen alpha 4 type IV
protein.
Length = 1690
Score = 37.1 bits (82), Expect = 0.082
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -3
Query: 123 PDMEGPVASGCMGNPSIKGKVGSEGTFGSP*P 28
P M GP GC G P + G+ G +G GSP P
Sbjct: 1397 PGMRGPPGPGCKGEPGLDGRRGVDGVPGSPGP 1428
>X81053-1|CAA56943.1| 1690|Homo sapiens type IV collagen alpha 4 chain
protein.
Length = 1690
Score = 37.1 bits (82), Expect = 0.082
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -3
Query: 123 PDMEGPVASGCMGNPSIKGKVGSEGTFGSP*P 28
P M GP GC G P + G+ G +G GSP P
Sbjct: 1397 PGMRGPPGPGCKGEPGLDGRRGVDGVPGSPGP 1428
>D17391-1|BAA04214.1| 472|Homo sapiens alpha 4(IV) collagen
protein.
Length = 472
Score = 37.1 bits (82), Expect = 0.082
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -3
Query: 123 PDMEGPVASGCMGNPSIKGKVGSEGTFGSP*P 28
P M GP GC G P + G+ G +G GSP P
Sbjct: 179 PGMRGPPGPGCKGEPGLDGRRGVDGVPGSPGP 210
>AC073149-2|AAY24061.1| 365|Homo sapiens unknown protein.
Length = 365
Score = 37.1 bits (82), Expect = 0.082
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -3
Query: 123 PDMEGPVASGCMGNPSIKGKVGSEGTFGSP*P 28
P M GP GC G P + G+ G +G GSP P
Sbjct: 72 PGMRGPSGPGCKGEPGLDGRRGVDGVPGSPGP 103
>BC099645-1|AAH99645.1| 657|Homo sapiens COL8A2 protein protein.
Length = 657
Score = 32.3 bits (70), Expect = 2.3
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Frame = -3
Query: 189 SACGAVQYPC*NVGP--LPAAVV*PDMEGPVASGCMGNPSIKGKVGSEGTFGSP*PGQTP 16
S +Q P +GP LP P + GP G G P G G G GSP P
Sbjct: 416 SGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPP 475
Query: 15 SP 10
P
Sbjct: 476 GP 477
>BC096297-1|AAH96297.1| 657|Homo sapiens COL8A2 protein protein.
Length = 657
Score = 32.3 bits (70), Expect = 2.3
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Frame = -3
Query: 189 SACGAVQYPC*NVGP--LPAAVV*PDMEGPVASGCMGNPSIKGKVGSEGTFGSP*PGQTP 16
S +Q P +GP LP P + GP G G P G G G GSP P
Sbjct: 416 SGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPP 475
Query: 15 SP 10
P
Sbjct: 476 GP 477
>AL138787-1|CAI22267.1| 703|Homo sapiens collagen type VIII alpha 2
protein.
Length = 703
Score = 32.3 bits (70), Expect = 2.3
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Frame = -3
Query: 189 SACGAVQYPC*NVGP--LPAAVV*PDMEGPVASGCMGNPSIKGKVGSEGTFGSP*PGQTP 16
S +Q P +GP LP P + GP G G P G G G GSP P
Sbjct: 462 SGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPP 521
Query: 15 SP 10
P
Sbjct: 522 GP 523
>AK074129-1|BAB84955.1| 705|Homo sapiens FLJ00201 protein protein.
Length = 705
Score = 32.3 bits (70), Expect = 2.3
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Frame = -3
Query: 189 SACGAVQYPC*NVGP--LPAAVV*PDMEGPVASGCMGNPSIKGKVGSEGTFGSP*PGQTP 16
S +Q P +GP LP P + GP G G P G G G GSP P
Sbjct: 464 SGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPP 523
Query: 15 SP 10
P
Sbjct: 524 GP 525
>J04177-1|AAA51891.1| 1806|Homo sapiens COL11A1 protein.
Length = 1806
Score = 31.5 bits (68), Expect = 4.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 108 PVASGCMGNPSIKGKVGSEGTFGSP*PGQTPSP 10
P GC G+P +G+ G +G G P PG P
Sbjct: 939 PGRMGCPGHPGQRGETGFQGKTGPPGPGGVVGP 971
>X57010-1|CAA40330.1| 243|Homo sapiens collagen II alpha 1 chain
protein.
Length = 243
Score = 30.3 bits (65), Expect = 9.4
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -3
Query: 123 PDMEGPVASGCMGNPSIKGKVGSEGTFGSP*PGQTPSPLP 4
P ++G A G G P +KG+ GS G GSP P P LP
Sbjct: 195 PGLDG--AKGEAGAPGVKGESGSPGENGSPGP-MGPRGLP 231
>X16711-1|CAA34683.1| 1160|Homo sapiens COL2A1 protein.
Length = 1160
Score = 30.3 bits (65), Expect = 9.4
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -3
Query: 123 PDMEGPVASGCMGNPSIKGKVGSEGTFGSP*PGQTPSPLP 4
P ++G A G G P +KG+ GS G GSP P P LP
Sbjct: 224 PGLDG--AKGEAGAPGVKGESGSPGENGSPGP-MGPRGLP 260
>X16468-1|CAA34488.1| 1418|Homo sapiens protein ( Human mRNA for
alpha-1 type II collagen. ).
Length = 1418
Score = 30.3 bits (65), Expect = 9.4
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -3
Query: 123 PDMEGPVASGCMGNPSIKGKVGSEGTFGSP*PGQTPSPLP 4
P ++G A G G P +KG+ GS G GSP P P LP
Sbjct: 224 PGLDG--AKGEAGAPGVKGESGSPGENGSPGP-MGPRGLP 260
>U76604-1|AAB51499.1| 1497|Homo sapiens 180 kDa bullous pemphigoid
antigen 2/type XVII collagen protein.
Length = 1497
Score = 30.3 bits (65), Expect = 9.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 96 GCMGNPSIKGKVGSEGTFGSP*PGQTPSPL 7
G G P + G VG +G+ GSP P P P+
Sbjct: 653 GPHGPPGVPGSVGPKGSSGSPGPQGPPGPV 682
>M91669-1|AAA35605.1| 1532|Homo sapiens autoantigen protein.
Length = 1532
Score = 30.3 bits (65), Expect = 9.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 96 GCMGNPSIKGKVGSEGTFGSP*PGQTPSPL 7
G G P + G VG +G+ GSP P P P+
Sbjct: 688 GPHGPPGVPGSVGPKGSSGSPGPQGPPGPV 717
>M63730-1|AAA51839.1| 349|Homo sapiens BPAG2 protein.
Length = 349
Score = 30.3 bits (65), Expect = 9.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 96 GCMGNPSIKGKVGSEGTFGSP*PGQTPSPL 7
G G P + G VG +G+ GSP P P P+
Sbjct: 146 GPHGPPGVPGSVGPKGSSGSPGPQGPPGPV 175
>M60832-1|AAA62822.1| 635|Homo sapiens alpha-2 type VIII collagen
protein.
Length = 635
Score = 30.3 bits (65), Expect = 9.4
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Frame = -3
Query: 189 SACGAVQYPC*NVGP--LPAAVV*PDMEGPVASGCMGNPSIKGKVGSEGTFGSP 34
S +Q P +GP LP P + GP G G P G G G GSP
Sbjct: 397 SGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPRGPPGVPGSP 450
>L10347-1|AAC41772.1| 1487|Homo sapiens alpha-1 type II collagen
protein.
Length = 1487
Score = 30.3 bits (65), Expect = 9.4
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -3
Query: 123 PDMEGPVASGCMGNPSIKGKVGSEGTFGSP*PGQTPSPLP 4
P ++G A G G P +KG+ GS G GSP P P LP
Sbjct: 293 PGLDG--AKGEAGAPGVKGESGSPGENGSPGP-MGPRGLP 329
>BC116449-1|AAI16450.1| 1487|Homo sapiens collagen, type II, alpha 1
(primary osteoarthritis, spondyloepiphyseal dysplasi
protein.
Length = 1487
Score = 30.3 bits (65), Expect = 9.4
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -3
Query: 123 PDMEGPVASGCMGNPSIKGKVGSEGTFGSP*PGQTPSPLP 4
P ++G A G G P +KG+ GS G GSP P P LP
Sbjct: 293 PGLDG--AKGEAGAPGVKGESGSPGENGSPGP-MGPRGLP 329
>AL138761-5|CAC00589.1| 1497|Homo sapiens collagen type XVII alpha 1
protein.
Length = 1497
Score = 30.3 bits (65), Expect = 9.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 96 GCMGNPSIKGKVGSEGTFGSP*PGQTPSPL 7
G G P + G VG +G+ GSP P P P+
Sbjct: 653 GPHGPPGVPGSVGPKGSSGSPGPQGPPGPV 682
>AL138761-4|CAI12398.1| 1415|Homo sapiens collagen type XVII alpha 1
protein.
Length = 1415
Score = 30.3 bits (65), Expect = 9.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 96 GCMGNPSIKGKVGSEGTFGSP*PGQTPSPL 7
G G P + G VG +G+ GSP P P P+
Sbjct: 653 GPHGPPGVPGSVGPKGSSGSPGPQGPPGPV 682
>AJ245433-1|CAB51603.1| 312|Homo sapiens G4 protein protein.
Length = 312
Score = 30.3 bits (65), Expect = 9.4
Identities = 18/74 (24%), Positives = 32/74 (43%)
Frame = +2
Query: 170 WTAPQADQQTSNRSTSQNRDRRSKSKNKEHNKTRIPRPQRDKPGINPVIPPAMPGIGMPT 349
W P + Q S R + + + + + TR +PG++P ++PG G P
Sbjct: 93 WDQPISSTQESGRLEAGGASPKLRWDHVDSGGTR-------RPGVSPEGDSSVPGPGAPL 145
Query: 350 IDAAKRRQLPAWIR 391
+R +L W+R
Sbjct: 146 EKPGRREKLLGWLR 159
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,258,923
Number of Sequences: 237096
Number of extensions: 2327403
Number of successful extensions: 11749
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 7330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11576
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10928473528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -