Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_H12
(857 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 45 8e-05
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr... 38 0.009
AC006712-6|AAO21405.1| 765|Caenorhabditis elegans Temporarily a... 33 0.34
AC006712-5|AAK39326.2| 851|Caenorhabditis elegans Temporarily a... 33 0.34
Z69637-3|CAA93468.1| 173|Caenorhabditis elegans Hypothetical pr... 32 0.45
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 32 0.45
AF003130-8|AAB54130.2| 611|Caenorhabditis elegans Pip kinase pr... 31 1.1
Z68337-3|CAA92750.2| 712|Caenorhabditis elegans Hypothetical pr... 31 1.4
U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter... 31 1.4
U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter... 31 1.4
L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein. 31 1.4
AL032639-11|CAA21637.2| 426|Caenorhabditis elegans Hypothetical... 31 1.4
AF036699-4|AAB88358.1| 281|Caenorhabditis elegans Collagen prot... 31 1.4
U50312-8|AAA92324.1| 294|Caenorhabditis elegans Collagen protei... 30 1.8
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 30 1.8
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 30 2.4
U53338-4|AAA96192.3| 235|Caenorhabditis elegans Hypothetical pr... 30 2.4
AF317421-1|AAK69599.1| 235|Caenorhabditis elegans lysosomal-ass... 30 2.4
Z98877-2|CAB11570.1| 907|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 29 3.2
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 29 3.2
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 29 3.2
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 29 3.2
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 29 3.2
U10438-8|AAU87835.1| 627|Caenorhabditis elegans Hypothetical pr... 29 3.2
AL033514-1|CAA22081.2| 275|Caenorhabditis elegans Hypothetical ... 29 3.2
AF172092-1|AAD48876.1| 275|Caenorhabditis elegans homeodomain p... 29 3.2
Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical pr... 29 4.2
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 29 4.2
AC024778-1|AAF60567.1| 393|Caenorhabditis elegans Collagen prot... 29 4.2
Z72511-3|CAA96657.1| 610|Caenorhabditis elegans Hypothetical pr... 29 5.6
U80450-4|AAB37829.1| 926|Caenorhabditis elegans Hypothetical pr... 28 7.4
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 28 7.4
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ... 28 7.4
AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical ... 28 7.4
Z99171-4|CAB16313.1| 722|Caenorhabditis elegans Hypothetical pr... 28 9.8
Z68507-1|CAA92826.1| 337|Caenorhabditis elegans Hypothetical pr... 28 9.8
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 28 9.8
U80441-8|AAB37656.1| 284|Caenorhabditis elegans Dumpy : shorter... 28 9.8
U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer ... 28 9.8
U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer ... 28 9.8
U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer ... 28 9.8
AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein. 28 9.8
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 44.8 bits (101), Expect = 8e-05
Identities = 42/139 (30%), Positives = 58/139 (41%), Gaps = 5/139 (3%)
Frame = +2
Query: 23 WPGHGDPKVPSEPTLPLIDGFPMQPDATGPSISGYTTAAGSGPTFQHGYWTAPQA----D 190
+PG P+ P+ P P FP A P AA S P+F P
Sbjct: 158 YPGPPRPQAPAAP--PPKSLFP---SAQKPK--PLFAAASSAPSFFGAPQRPPPQLHFFQ 210
Query: 191 QQTSNRSTSQNRDRRSKSKNKEHNKTRIPRPQRDKPGINPVIPPAMPGIGMP-TIDAAKR 367
+ S + Q D + + + + + P Q G+ P P G P ++ R
Sbjct: 211 ESPSVQHDFQQPDFQPDFQPENYQNSPEPPAQAGPKGVPPPAPLMASGPTNPYAMNKEAR 270
Query: 368 RQLPAWIREGLEKMEREKQ 424
++LPAWI EGLEK EREKQ
Sbjct: 271 KKLPAWILEGLEKAEREKQ 289
>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical
protein C27H6.1 protein.
Length = 1657
Score = 37.9 bits (84), Expect = 0.009
Identities = 26/97 (26%), Positives = 35/97 (36%)
Frame = +2
Query: 41 PKVPSEPTLPLIDGFPMQPDATGPSISGYTTAAGSGPTFQHGYWTAPQADQQTSNRSTSQ 220
P P P PL P QPD G SG+T A + P+A T + ++
Sbjct: 629 PPRPVAPMEPLFKQAPPQPDPFGWDSSGHTGDAPTASEPVQELSPTPEASSSTGTSAPAR 688
Query: 221 NRDRRSKSKNKEHNKTRIPRPQRDKPGINPVIPPAMP 331
R ++ K+ P R P P PP P
Sbjct: 689 PPPARPEAPKKDETAVDAAAPPRPPPAARP--PPPRP 723
>AC006712-6|AAO21405.1| 765|Caenorhabditis elegans Temporarily
assigned gene nameprotein 332, isoform b protein.
Length = 765
Score = 32.7 bits (71), Expect = 0.34
Identities = 19/97 (19%), Positives = 39/97 (40%)
Frame = +2
Query: 95 PDATGPSISGYTTAAGSGPTFQHGYWTAPQADQQTSNRSTSQNRDRRSKSKNKEHNKTRI 274
P G +S TTA+ + PT A + +++ + + T + + + E + +
Sbjct: 187 PSEAGSEVSSVTTASAAAPTVSESASVAAKPERKVAGKKTGKRKAESEDDEKPEPLRAKR 246
Query: 275 PRPQRDKPGINPVIPPAMPGIGMPTIDAAKRRQLPAW 385
K P++P P + + + K+ Q AW
Sbjct: 247 EVAVVKKEVHQPLLPSMKPCLKLLNDFSTKKYQEFAW 283
>AC006712-5|AAK39326.2| 851|Caenorhabditis elegans Temporarily
assigned gene nameprotein 332, isoform a protein.
Length = 851
Score = 32.7 bits (71), Expect = 0.34
Identities = 19/97 (19%), Positives = 39/97 (40%)
Frame = +2
Query: 95 PDATGPSISGYTTAAGSGPTFQHGYWTAPQADQQTSNRSTSQNRDRRSKSKNKEHNKTRI 274
P G +S TTA+ + PT A + +++ + + T + + + E + +
Sbjct: 187 PSEAGSEVSSVTTASAAAPTVSESASVAAKPERKVAGKKTGKRKAESEDDEKPEPLRAKR 246
Query: 275 PRPQRDKPGINPVIPPAMPGIGMPTIDAAKRRQLPAW 385
K P++P P + + + K+ Q AW
Sbjct: 247 EVAVVKKEVHQPLLPSMKPCLKLLNDFSTKKYQEFAW 283
>Z69637-3|CAA93468.1| 173|Caenorhabditis elegans Hypothetical
protein F35G2.3 protein.
Length = 173
Score = 32.3 bits (70), Expect = 0.45
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 174 QLHKLIN-KHQIEVLVKIEIEGQKARIKNTIKPEFQGHKEINQE 302
Q K+I K+++ L+K EIE K +N +K QG +E N+E
Sbjct: 117 QARKIIKEKNEMIELLKFEIEFNKTNFQNDLKSALQGSEEENKE 160
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 32.3 bits (70), Expect = 0.45
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 12/116 (10%)
Frame = +2
Query: 29 GHGDPKVP--SEPTLPLIDGFPMQPDATGPSISGYTTAAGSGPT------FQHGYWTAPQ 184
G PKV S+P +P+I G P+ PD T S S + + S T F+H + A
Sbjct: 254 GRNKPKVEDVSQPIVPVITGDPLNPDWTSNSTSSMSASFRSSSTVTAATSFKHSHTFAAD 313
Query: 185 ----ADQQTSNRSTSQNRDRRSKSKNKEHNKTRIPRPQRDKPGINPVIPPAMPGIG 340
D +T + T + ++R + + + + + + PP +P G
Sbjct: 314 PIKTTDWETPRKDTYGSTNQRQPQNIYKFEQEHVEQTYQIEKIEMDDTPPELPSRG 369
>AF003130-8|AAB54130.2| 611|Caenorhabditis elegans Pip kinase
protein 1 protein.
Length = 611
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 122 GYTTAAGSGPTFQHGYWTAPQADQQTSNRSTSQNRDRRSKSKNKEHNKTRIP--RPQRD 292
G +T+ G T Q G TA ++ + + ST N DR + ++ + +R+P R RD
Sbjct: 507 GASTSTPRGDTTQFGSQTARESTRLYNRDSTGINEDRANSAREPPSSMSRVPLRRSYRD 565
>Z68337-3|CAA92750.2| 712|Caenorhabditis elegans Hypothetical
protein M7.3 protein.
Length = 712
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +3
Query: 84 FPCNLMQLDLPYQAIQQQRGVDLHFNMGTGQLHKLINKHQIEVLVKI 224
F CN+M + P Q ++Q+RG+ + G + + K L ++
Sbjct: 382 FDCNMMDIHYPVQQLEQERGIQVTCKRKNGDIMTITMKSTESKLAEV 428
>U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform a protein.
Length = 335
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Frame = +2
Query: 23 WPGH-GDPKVPSEPTLPLIDGFPMQPDATGPS-ISGYTTAAGS----GPTFQHGYWTAPQ 184
WPG GD P P L IDG P TGP+ GY G+ GPT + P
Sbjct: 165 WPGFPGDVGPPGPPGLKGIDGEDGAPGETGPTGPPGYRGGPGAPGDKGPTPEGDLKEGPP 224
Query: 185 ADQ 193
D+
Sbjct: 225 GDE 227
>U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform b protein.
Length = 372
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Frame = +2
Query: 23 WPGH-GDPKVPSEPTLPLIDGFPMQPDATGPS-ISGYTTAAGS----GPTFQHGYWTAPQ 184
WPG GD P P L IDG P TGP+ GY G+ GPT + P
Sbjct: 202 WPGFPGDVGPPGPPGLKGIDGEDGAPGETGPTGPPGYRGGPGAPGDKGPTPEGDLKEGPP 261
Query: 185 ADQ 193
D+
Sbjct: 262 GDE 264
>L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein.
Length = 356
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Frame = +2
Query: 23 WPGH-GDPKVPSEPTLPLIDGFPMQPDATGPS-ISGYTTAAGS----GPTFQHGYWTAPQ 184
WPG GD P P L IDG P TGP+ GY G+ GPT + P
Sbjct: 186 WPGFPGDVGPPGPPGLKGIDGEDGAPGETGPTGPPGYRGGPGAPGDKGPTPEGDLKEGPP 245
Query: 185 ADQ 193
D+
Sbjct: 246 GDE 248
>AL032639-11|CAA21637.2| 426|Caenorhabditis elegans Hypothetical
protein Y38F1A.10b protein.
Length = 426
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +2
Query: 125 YTTAAGSGPTFQHGY---WTAPQADQQTSNRSTSQNRDRRSKSKNKEHNKTRIPRPQRDK 295
Y++A G + +G T+ D Q SN+ S ++ K+ N NKT + P ++
Sbjct: 62 YSSARSVGNSLSNGSVVSTTSSDGDVQLSNKENSNDKSVGDKNGNTTTNKTTVEPPPPEE 121
Query: 296 PGI 304
P +
Sbjct: 122 PPV 124
>AF036699-4|AAB88358.1| 281|Caenorhabditis elegans Collagen protein
104 protein.
Length = 281
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = -3
Query: 108 PVASGCMGNPSIKGKVGSEGTFGSP*PGQTPS 13
P A G G P KG+ GS GT G+P P Q PS
Sbjct: 183 PGAPGNNGEPGDKGRDGSHGTKGAPGP-QGPS 213
>U50312-8|AAA92324.1| 294|Caenorhabditis elegans Collagen protein
145 protein.
Length = 294
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 11 GDGVWPGH-GDPKVPSEPTLPLIDGFPMQPDATGPSISGYTTAAGS 145
G+ +PG G P +P P DGFP QP A G SG A G+
Sbjct: 177 GNDGFPGAPGAPGDNGQPGTPGQDGFPGQPGADGQRGSGAPGAPGA 222
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = -3
Query: 165 PC*NVGPLPAAVV*PD-MEGPVAS-GCMGNPSIKGKVGSEGTFGSP*PGQTPSP 10
PC P PA PD +GP+ G G G+ G++G G P PG P P
Sbjct: 139 PCPEGPPGPAGPPGPDGNKGPLGPPGPPGPEGPNGEPGNKGPAGPPGPGGKPGP 192
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 29.9 bits (64), Expect = 2.4
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Frame = +2
Query: 29 GHGDPKVP--SEPTLPLIDGFPMQPDATGPSISGYT---TAAGSGPTFQHGYWTAPQADQ 193
G PKV S+P +P+I G P+ PD T + + + T A P + W P+ D
Sbjct: 262 GRNKPKVEDVSQPIVPVITGDPLNPDWTVTAATSFKHSHTFAAIDP-IKTTDWETPRKD- 319
Query: 194 QTSNRSTSQNRDRRSKSKNKEH 259
+ ST+Q + + +EH
Sbjct: 320 --TYGSTNQRQPQNIYKFEQEH 339
>U53338-4|AAA96192.3| 235|Caenorhabditis elegans Hypothetical
protein C05E11.3 protein.
Length = 235
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -1
Query: 323 LVE*LDLFLVY-LFVALEFWFYCVLYSC 243
+V L +VY + +ALEFWF V+Y+C
Sbjct: 181 MVRIYSLMIVYAVSLALEFWFIVVIYNC 208
>AF317421-1|AAK69599.1| 235|Caenorhabditis elegans
lysosomal-associated transmembraneprotein protein.
Length = 235
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -1
Query: 323 LVE*LDLFLVY-LFVALEFWFYCVLYSC 243
+V L +VY + +ALEFWF V+Y+C
Sbjct: 181 MVRIYSLMIVYAVSLALEFWFIVVIYNC 208
>Z98877-2|CAB11570.1| 907|Caenorhabditis elegans Hypothetical
protein Y69H2.2 protein.
Length = 907
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 123 PDMEGPVASGCMGNPSIKG 67
PD E PVAS C NP + G
Sbjct: 337 PDCENPVASACTPNPCVNG 355
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -3
Query: 123 PDMEGPVASGCMGNPSIKGKVGSEGTFGSP*PGQTPSP 10
P + GP G +GNP + G G +G G PGQ SP
Sbjct: 794 PGIPGP--KGDVGNPGLPGLNGQKGEPGVGVPGQPGSP 829
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -3
Query: 123 PDMEGPVASGCMGNPSIKGKVGSEGTFGSP*PGQTPSP 10
P + GP G +GNP + G G +G G PGQ SP
Sbjct: 793 PGIPGP--KGDVGNPGLPGLNGQKGEPGVGVPGQPGSP 828
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -3
Query: 123 PDMEGPVASGCMGNPSIKGKVGSEGTFGSP*PGQTPSP 10
P + GP G +GNP + G G +G G PGQ SP
Sbjct: 793 PGIPGP--KGDVGNPGLPGLNGQKGEPGVGVPGQPGSP 828
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -3
Query: 123 PDMEGPVASGCMGNPSIKGKVGSEGTFGSP*PGQTPSP 10
P + GP G +GNP + G G +G G PGQ SP
Sbjct: 794 PGIPGP--KGDVGNPGLPGLNGQKGEPGVGVPGQPGSP 829
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -3
Query: 123 PDMEGPVASGCMGNPSIKGKVGSEGTFGSP*PGQTPSP 10
P + GP G +GNP + G G +G G PGQ SP
Sbjct: 830 PGIPGP--KGDVGNPGLPGLNGQKGEPGVGVPGQPGSP 865
>U10438-8|AAU87835.1| 627|Caenorhabditis elegans Hypothetical
protein B0280.2 protein.
Length = 627
Score = 29.5 bits (63), Expect = 3.2
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 5/121 (4%)
Frame = +2
Query: 29 GHGDPKVP--SEPTLPLIDGFPMQPDATGPSISGYTTAAGSGPTFQHGYWTAPQADQQT- 199
G PKV S+P +P+I G P+ PD +T A + H + P D
Sbjct: 249 GRNKPKVEDVSQPIVPVITGDPLNPD--------WTVTAATSFKHSHTFSADPIKDPSVL 300
Query: 200 SNRSTS-QNRDRRSKSKNKEHNKTRIPRPQRDK-PGINPVIPPAMPGIGMPTIDAAKRRQ 373
NRSTS + R S + H + + D P P PP +P ID R+
Sbjct: 301 LNRSTSVRVRGSLSTPRIPTHRDSYRSATKPDTVPKQTP--PPTHNSYVLPHIDERMTRK 358
Query: 374 L 376
+
Sbjct: 359 M 359
>AL033514-1|CAA22081.2| 275|Caenorhabditis elegans Hypothetical
protein Y75B8A.1 protein.
Length = 275
Score = 29.5 bits (63), Expect = 3.2
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Frame = +2
Query: 113 SISGYTTAAGSGPTFQHGYWT--APQADQQTSNRSTSQNRDRRSKSKNKEHNKTRIPRPQ 286
S S TT++ + QH +W+ A Q Q S S + S S N + +
Sbjct: 40 SDSPATTSSAAAAAMQHNFWSTRAAQLQQSVSGSSGVSSGSSSSASNNLSRTQADNHSER 99
Query: 287 RDKPGINP-VIP-PAMPGIGMPTIDAA 361
+P V P P G+ MP AA
Sbjct: 100 GSDTASSPQVAPLPTSSGMSMPAAAAA 126
>AF172092-1|AAD48876.1| 275|Caenorhabditis elegans homeodomain
protein PHP-3 protein.
Length = 275
Score = 29.5 bits (63), Expect = 3.2
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Frame = +2
Query: 113 SISGYTTAAGSGPTFQHGYWT--APQADQQTSNRSTSQNRDRRSKSKNKEHNKTRIPRPQ 286
S S TT++ + QH +W+ A Q Q S S + S S N + +
Sbjct: 40 SDSPATTSSAAAAAMQHNFWSTRAAQLQQSVSGSSGVSSGSSSSASNNLSRTQADNHSER 99
Query: 287 RDKPGINP-VIP-PAMPGIGMPTIDAA 361
+P V P P G+ MP AA
Sbjct: 100 GSDTASSPQVAPLPTSSGMSMPAAAAA 126
>Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical
protein C15A11.1 protein.
Length = 303
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/53 (39%), Positives = 26/53 (49%)
Frame = +2
Query: 8 NGDGVWPGHGDPKVPSEPTLPLIDGFPMQPDATGPSISGYTTAAGSGPTFQHG 166
+GD PG P P+ P P DG QP A GP +G AAG+ T + G
Sbjct: 138 DGDAAGPGEAGPAGPAGPPGP--DG---QPGAPGP--NGQPGAAGTTSTNEPG 183
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -3
Query: 123 PDMEGPVA-SGCMGNPSIKGKVGSEGTFGSP*PGQTPSP 10
P EGP +G GN G+ G+EG G P P P
Sbjct: 146 PGPEGPAGPAGPAGNAGADGEAGAEGPAGEAGPPGPPGP 184
>AC024778-1|AAF60567.1| 393|Caenorhabditis elegans Collagen protein
115 protein.
Length = 393
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 123 PDMEGPVAS-GCMGNPSIKGKVGSEGTFGSP 34
P ++G + S G G P ++G+ G+ G GSP
Sbjct: 335 PGLQGDIGSHGIAGRPGLQGRPGNPGAPGSP 365
>Z72511-3|CAA96657.1| 610|Caenorhabditis elegans Hypothetical
protein F55A11.3 protein.
Length = 610
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/58 (36%), Positives = 23/58 (39%)
Frame = +2
Query: 8 NGDGVWPGHGDPKVPSEPTLPLIDGFPMQPDATGPSISGYTTAAGSGPTFQHGYWTAP 181
N G G G P P P L GFP QP G + G A G F H + AP
Sbjct: 360 NVAGAQIGAGMP--PFLPFLGHQFGFPQQPAGAGGAQPGAAQAGGQPGPFPHQIFYAP 415
>U80450-4|AAB37829.1| 926|Caenorhabditis elegans Hypothetical
protein M01E11.3 protein.
Length = 926
Score = 28.3 bits (60), Expect = 7.4
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +2
Query: 197 TSNRSTSQNRDRRSKS-KNKEHNKTRIPRPQRDKPG--INPVIPPAMPGIGMPTIDAAKR 367
T N + S ++ ++ S N + K +I ++ PG I P P P IG P +++ KR
Sbjct: 401 TFNSTNSFDKSKKVMSIDNSKDQKMKI----KELPGQLIRPT-PIEKPIIGDPRMNSEKR 455
Query: 368 RQLPAWIREGLEKMERE 418
+ + W+ E + E E
Sbjct: 456 KDVSVWVWEDRKGSEEE 472
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein
91 protein.
Length = 278
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Frame = -3
Query: 141 PAAVV*PDMEGPVAS----GCMGNPSIKGKVGSEGTFGSP*PGQTPSP 10
P A P +GPV S G G P G G+ G G P P P
Sbjct: 204 PGAAGAPGPQGPVGSDGQPGSAGAPGAPGPAGAPGVDGQPGANGQPGP 251
>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
protein Y79H2A.3a protein.
Length = 2129
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 188 DQQTSNRSTSQNRDRRSKSKNKEHNKTRIPRPQR 289
D ++ NRS S++R RRS+S +EH + R +R
Sbjct: 1506 DPRSKNRSRSRDRARRSRS--REHKRARSRSAER 1537
>AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical
protein C51G7.3 protein.
Length = 754
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 188 DQQTSNRSTSQNRDRRSKSKNKEHNKTRIPRPQR 289
D ++ NRS S++R RRS+S +EH + R +R
Sbjct: 131 DPRSKNRSRSRDRARRSRS--REHKRARSRSAER 162
>Z99171-4|CAB16313.1| 722|Caenorhabditis elegans Hypothetical
protein F47G4.4 protein.
Length = 722
Score = 27.9 bits (59), Expect = 9.8
Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 3/94 (3%)
Frame = +2
Query: 110 PSISGYTTAAGSGPTFQHGYWTAPQADQQTSNRSTSQNRDRRSKSKNKEH--NKTRIPRP 283
PS+SGY A P+ T A TS S + R + S+ + T I RP
Sbjct: 420 PSLSGYNNRANPSPSMSDLRTTKSMAGSTTSLLSERAPKKRSTSSRRNQEPITITYIGRP 479
Query: 284 QRDKPG-INPVIPPAMPGIGMPTIDAAKRRQLPA 382
+ G + + + P+ AK+ P+
Sbjct: 480 RTPSEGDVASTVSSSTSRNRRPSPSVAKKTSPPS 513
>Z68507-1|CAA92826.1| 337|Caenorhabditis elegans Hypothetical
protein M18.1 protein.
Length = 337
Score = 27.9 bits (59), Expect = 9.8
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = +2
Query: 8 NGDGVWPGHGDPKVPSEPTLPLIDGFPMQPDATGPSISGYTTAAGSGPTFQHGYWTAP-Q 184
NG+ PG+ P +P P DG P QP GP G AAG P Y P +
Sbjct: 226 NGNDGQPGNDG--APGQPGQPGPDGHPGQPGNAGP--PGTPGAAGQ-PGGDAAYCPCPSR 280
Query: 185 ADQQTSNRSTSQNRDRRSKSKNKEHNK 265
+ + + ++NR ++ ++ K
Sbjct: 281 SSVVRAQAAVARNRHVAARHRSVSRRK 307
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = -3
Query: 165 PC*NVGPLPAAVV*PD-MEGPVAS-GCMGNPSIKGKVGSEGTFGSP*PGQTPSP 10
PC P PA P +GP+ G G G G++G G P PG P P
Sbjct: 137 PCPEGPPGPAGPPGPQGNKGPLGPPGPPGPEGPNGTAGNKGPAGPPGPGGKPGP 190
>U80441-8|AAB37656.1| 284|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 5 protein.
Length = 284
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 123 PDMEGPVAS-GCMGNPSIKGKVGSEGTFGSP 34
P M GP G GNP +G+ G++G G P
Sbjct: 216 PGMPGPRGEPGNNGNPGEEGQTGAQGPTGQP 246
>U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform c protein.
Length = 796
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = +2
Query: 107 GPSISGYTTAAGSGPTFQHGYWTAPQADQQTSNRSTSQNRDRRSKSKNKEHNKTRIPRP 283
GP++ G+ T P F H + P Q S TSQ + + + N I RP
Sbjct: 399 GPNLYGFPTPY---PDFHHPFNQQPHQPPQLSQNHTSQQGSHQPGHQGQVPNDPPISRP 454
>U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform a protein.
Length = 892
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = +2
Query: 107 GPSISGYTTAAGSGPTFQHGYWTAPQADQQTSNRSTSQNRDRRSKSKNKEHNKTRIPRP 283
GP++ G+ T P F H + P Q S TSQ + + + N I RP
Sbjct: 495 GPNLYGFPTPY---PDFHHPFNQQPHQPPQLSQNHTSQQGSHQPGHQGQVPNDPPISRP 550
>U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform b protein.
Length = 864
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = +2
Query: 107 GPSISGYTTAAGSGPTFQHGYWTAPQADQQTSNRSTSQNRDRRSKSKNKEHNKTRIPRP 283
GP++ G+ T P F H + P Q S TSQ + + + N I RP
Sbjct: 467 GPNLYGFPTPY---PDFHHPFNQQPHQPPQLSQNHTSQQGSHQPGHQGQVPNDPPISRP 522
>AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein.
Length = 796
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = +2
Query: 107 GPSISGYTTAAGSGPTFQHGYWTAPQADQQTSNRSTSQNRDRRSKSKNKEHNKTRIPRP 283
GP++ G+ T P F H + P Q S TSQ + + + N I RP
Sbjct: 399 GPNLYGFPTPY---PDFHHPFNQQPHQPPQLSQNHTSQQGSHQPGHQGQVPNDPPISRP 454
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,241,374
Number of Sequences: 27780
Number of extensions: 313203
Number of successful extensions: 1920
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 1368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1895
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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