Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_H10
(909 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 413 e-116
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 229 5e-61
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 227 1e-60
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 152 6e-38
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 90 3e-19
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 87 3e-18
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 83 7e-17
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 68 2e-12
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 65 1e-11
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 37 0.005
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 34 0.024
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 33 0.056
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 0.27
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 31 0.30
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.1
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 3.7
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 3.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.9
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 6.4
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 8.5
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 8.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 413 bits (1016), Expect = e-116
Identities = 195/236 (82%), Positives = 205/236 (86%)
Frame = +2
Query: 200 PRIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY 379
P IVGRPRH G+MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFY
Sbjct: 32 PSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFY 91
Query: 380 NELRVAPEEHPVLLTEAPLNPKANRERMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGI 559
NELRVAPEEHP LLTEAPLNPK+NRE+MTQI+FETFN PA YVAIQAVLSLYASGRTTGI
Sbjct: 92 NELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGI 151
Query: 560 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMXILTERGYSFTTTAEREIVRD 739
VLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLM IL ERGY+F+TTAEREIVRD
Sbjct: 152 VLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRD 211
Query: 740 IKXXLCYVALDFEQXMAXXASSXSLXKXYXLPDGQVIXIGXXXXPLPKGSXXPSFL 907
IK LCYVALDFEQ + A S SL K Y LPDGQVI IG P+ PS L
Sbjct: 212 IKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSAL 267
Score = 44.4 bits (100), Expect = 2e-05
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +1
Query: 151 MCKAGFAGDDAPRAVFPSNRGK 216
MCKAGFAGDDAPRAVFPS G+
Sbjct: 16 MCKAGFAGDDAPRAVFPSIVGR 37
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 229 bits (559), Expect = 5e-61
Identities = 107/237 (45%), Positives = 152/237 (64%), Gaps = 1/237 (0%)
Frame = +2
Query: 200 PRIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY 379
P VGR +H+ VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + +
Sbjct: 36 PTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYS 95
Query: 380 NE-LRVAPEEHPVLLTEAPLNPKANRERMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 556
++ L PEEHP+LLTE PL N+E++ + +ET N PA+ ++Q VL+LYAS RTTG
Sbjct: 96 DQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTG 155
Query: 557 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMXILTERGYSFTTTAEREIVR 736
IVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L + G+ ++AE+EIVR
Sbjct: 156 IVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVR 215
Query: 737 DIKXXLCYVALDFEQXMAXXASSXSLXKXYXLPDGQVIXIGXXXXPLPKGSXXPSFL 907
+IK CYVA DF + Y LPD Q I +G P+ P +
Sbjct: 216 EIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMM 272
Score = 31.5 bits (68), Expect = 0.17
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +1
Query: 157 KAGFAGDDAPRAVFPSNRGK 216
KAGFAGDD P+ +FP+ G+
Sbjct: 22 KAGFAGDDIPKCLFPTCVGR 41
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 227 bits (556), Expect = 1e-60
Identities = 107/230 (46%), Positives = 154/230 (66%), Gaps = 2/230 (0%)
Frame = +2
Query: 200 PRIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHT 373
P IVGRP R + + KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +T
Sbjct: 30 PSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYT 89
Query: 374 FYNELRVAPEEHPVLLTEAPLNPKANRERMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 553
F+ +L++ P +LLTE P+NP ANRE+M + MFE + +YVAIQAVLSLYA G ++
Sbjct: 90 FFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSS 149
Query: 554 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMXILTERGYSFTTTAEREIV 733
G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +L +GY+F TA+ E V
Sbjct: 150 GVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETV 209
Query: 734 RDIKXXLCYVALDFEQXMAXXASSXSLXKXYXLPDGQVIXIGXXXXPLPK 883
R++K LCYV+ D E + L + Y LPDG+VI +G P+
Sbjct: 210 REMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPE 259
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 152 bits (369), Expect = 6e-38
Identities = 81/183 (44%), Positives = 110/183 (60%), Gaps = 11/183 (6%)
Frame = +2
Query: 257 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 433
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 434 LNPKANRERMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSH 589
LNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192
Query: 590 TVPIYEGYALPHAILRLDLAGRDLTDYLMXILTERGY--SFTTTAEREIVRDIKXXLCYV 763
+P+ EGY + +I + LAGRD+T ++ +L +R S TAER IK CYV
Sbjct: 193 IIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEECCYV 247
Query: 764 ALD 772
D
Sbjct: 248 CPD 250
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 157 KAGFAGDDAPRAVFPS 204
K G+AG+DAP VFP+
Sbjct: 18 KLGYAGNDAPSYVFPT 33
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 90.2 bits (214), Expect = 3e-19
Identities = 49/185 (26%), Positives = 94/185 (50%), Gaps = 3/185 (1%)
Frame = +2
Query: 245 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 421
+ + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 422 TEAPLNPKANRERMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTV 595
TE NP R MT+++FE +N P++ I + S Y + + ++GIVL+ G+ SH +
Sbjct: 121 TEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVI 180
Query: 596 PIYEGYALPHAILRLDLAGRDLTDYLMXILTERGYSFTTTAEREIVRDIKXXLCYVALDF 775
P+ G + R+ G + YL+ + + SF + C+V+ D+
Sbjct: 181 PVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHCHVSSDY 240
Query: 776 EQXMA 790
+A
Sbjct: 241 THDIA 245
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 87.0 bits (206), Expect = 3e-18
Identities = 43/134 (32%), Positives = 68/134 (50%)
Frame = +2
Query: 299 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRERMTQIMF 478
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR + + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 479 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 658
E+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L +G
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNA 182
Query: 659 LTDYLMXILTERGY 700
+ D L L ++ +
Sbjct: 183 INDILAQTLRDKNF 196
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 82.6 bits (195), Expect = 7e-17
Identities = 41/147 (27%), Positives = 77/147 (52%), Gaps = 2/147 (1%)
Frame = +2
Query: 218 PRHQGVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 391
P + GV + ++ YV DE Q I + +K +GI+ +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 392 VAPEEHPVLLTEAPLNPKANRERMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 571
V P E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A+ ++T +++D
Sbjct: 97 VNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDI 156
Query: 572 GDGVSHTVPIYEGYALPHAILRLDLAG 652
G + P+ +G + I + LAG
Sbjct: 157 GSDNASVTPVVDGLIIRKGIFKQSLAG 183
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 67.7 bits (158), Expect = 2e-12
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 4/130 (3%)
Frame = +2
Query: 314 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANRERMTQIMFE 481
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 482 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 661
P +A + ++ LYA G G+V+D G + PI +G + A +L L GR +
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYM 231
Query: 662 TDYLMXILTE 691
T +L +L E
Sbjct: 232 TQHLQNLLRE 241
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 64.9 bits (151), Expect = 1e-11
Identities = 53/212 (25%), Positives = 92/212 (43%), Gaps = 20/212 (9%)
Frame = +2
Query: 263 YVGDEAQSKRGILTLKYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEA 430
++G+E + TL++ H G + +W +W N + P ++ +LLT+
Sbjct: 43 FLGNELANCNDFTTLQFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQP 102
Query: 431 PLNPKANRERMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG--------------IVLD 568
+ Q++FE F A A L + G T +V+D
Sbjct: 103 VFTMPSIEHNTIQLVFEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVID 162
Query: 569 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMXILTERGYSFTTTAEREIVRDIKX 748
SG +H +P+ + A+ R+D+ G+ LT+YL +++ R Y+ E IV +IK
Sbjct: 163 SGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVNEIKE 220
Query: 749 XLCYVALDFEQXM--AXXASSXSLXKXYXLPD 838
+CYV+ +F++ M L Y LPD
Sbjct: 221 SVCYVSQNFKEDMEICHEKPRSKLEICYALPD 252
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 36.7 bits (81), Expect = 0.005
Identities = 30/87 (34%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = +3
Query: 375 STMSCVSPPRNTQSCSLRLPSTPRPTERG*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPP 554
S+ S PP +T S S P PT SC+ ++ PP T S S P VPP
Sbjct: 144 SSTSIPIPPTSTSSTDTN--SNPLPTTS---TSCTTSTSIPP-TGGSSSLSTPITPTVPP 197
Query: 555 VS-CWTPATVSPTPCPSTRDTHSPTPS 632
S T + PT ST SP P+
Sbjct: 198 TSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 33.9 bits (74), Expect = 0.032
Identities = 30/90 (33%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = +3
Query: 366 IIPSTMSCVSPPRNTQSCSLRLPSTPRPTERG*PRSCSKHSTRPPCTSPSKPCSRCTRPV 545
II + S S T S S LPST SC+ ++ PP T S S P
Sbjct: 87 IITESTSSTSSASTTGSSSSPLPSTST--------SCTTSTSIPP-TGGSSSLSTPITPT 137
Query: 546 VPPVS-CWTPATVSPTPCPSTRDTHSPTPS 632
VPP S T + PT ST +P P+
Sbjct: 138 VPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
Score = 33.5 bits (73), Expect = 0.042
Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = +3
Query: 375 STMSCVSPPRNTQSCSLRLPSTPRPTERG*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPP 554
S+ S PP +T S S+P PT SC+ ++ P T S S P VPP
Sbjct: 201 SSTSIPIPPTSTSSTDTN--SSPLPTTS---TSCTTSTSIP--TGGSSSLSTPITPTVPP 253
Query: 555 VS-CWTPATVSPTPCPSTRDTHSPTPS 632
S T + PT ST SP P+
Sbjct: 254 TSTSSTSIPIPPTSTSSTDTNSSPLPT 280
Score = 31.1 bits (67), Expect = 0.23
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +3
Query: 375 STMSCVSPPRNTQSCSLRLPSTPRPTERG*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPP 554
ST S +PP + S S+P + SC+ ++ PP + + P + P VPP
Sbjct: 363 STSSTSTPPPPASTSSTGTSSSPLLSTS---TSCTTSTSIPPTGNSTTPVT----PTVPP 415
Query: 555 VSCWTPATVSPTPC-PSTRDTHSPTP 629
S TP T T C ST ++ TP
Sbjct: 416 TSSSTPLTT--TNCTTSTSVPYTSTP 439
Score = 29.1 bits (62), Expect = 0.91
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Frame = +3
Query: 375 STMSCVSP-PRNTQSC--SLRLP----STPRPTERG*PRSCSKHSTRPPCTSPSKPCSRC 533
ST + SP P + SC S +P ST T P S S ST PP S S +
Sbjct: 324 STGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSS 383
Query: 534 TRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 632
+ + SC T ++ PT +T T + P+
Sbjct: 384 SPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPT 416
Score = 28.3 bits (60), Expect = 1.6
Identities = 28/89 (31%), Positives = 33/89 (37%), Gaps = 2/89 (2%)
Frame = +3
Query: 369 IPSTMSCVSPPRNT-QSCSLRLPSTPRPTERG*PRSCSKHSTRP-PCTSPSKPCSRCTRP 542
IP T + +P T S STP P P S S T P S S C+ T
Sbjct: 291 IPPTGNSTTPVTPTVPPTSTSSTSTPPP-----PASTSSTGTSSSPLPSTSTSCTTSTS- 344
Query: 543 VVPPVSCWTPATVSPTPCPSTRDTHSPTP 629
+PP T P ST T +P P
Sbjct: 345 -IPPTGNSTTPVTPTVPPTSTSSTSTPPP 372
Score = 27.1 bits (57), Expect = 3.7
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Frame = +3
Query: 375 STMSCVSP-PRNTQSC--SLRLP----STPRPTERG*PRSCSKHSTRPPCTSPSKPCSRC 533
ST + SP P + SC S +P ST T P S S ST PP S S +
Sbjct: 270 STDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSS 329
Query: 534 TRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 632
+ SC T ++ PT +T T + P+
Sbjct: 330 SPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPT 362
Score = 27.1 bits (57), Expect = 3.7
Identities = 29/91 (31%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Frame = +3
Query: 369 IPSTMSCVSPPRNT-QSCSLRLPSTPRPTERG*PRSCSKHSTRP-PCTSPSKPCSRCTRP 542
IP T + +P T S STP P P S S T P S S C+ T
Sbjct: 345 IPPTGNSTTPVTPTVPPTSTSSTSTPPP-----PASTSSTGTSSSPLLSTSTSCTTSTS- 398
Query: 543 VVPPVSCWTPATVSPTPCPSTRDTHSPTPSC 635
+PP T V+PT P++ T T +C
Sbjct: 399 -IPPTGNST-TPVTPTVPPTSSSTPLTTTNC 427
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 34.3 bits (75), Expect = 0.024
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Frame = +3
Query: 426 RLPSTPRPTERG*PRSCSKHSTRP---PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPC 596
R+P P+ + + P P P T+P P T PV P S P+ P P
Sbjct: 1010 RVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPA 1068
Query: 597 PSTRDTHSPTPS 632
PS+ P PS
Sbjct: 1069 PSSEIPSIPAPS 1080
Score = 31.1 bits (67), Expect = 0.23
Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Frame = +3
Query: 375 STMSCVSPPRNTQSCSLRLPSTPRPTERG*PRSCSKHSTRPPCTSPSKPCSRCTRP--VV 548
S+ S P + S +PS P P+ G P S PP PS +P V
Sbjct: 1055 SSSGAPSAPPPVPAPSSEIPSIPAPS--GAP-PVPAPSGIPPVPKPSVAAPPVPKPSVAV 1111
Query: 549 PPVSCWTPATVSPTPCPSTRDTHSPTPS 632
PPV P+ P P PS P PS
Sbjct: 1112 PPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
Score = 28.7 bits (61), Expect = 1.2
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Frame = +3
Query: 420 SLRLPSTPRPTERG*PRSCSKHSTRPPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTP 593
S+ P P P+ G P PP +PS +P VPPV P+ P P
Sbjct: 1146 SVAAPPVPAPS--GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVP 1201
Query: 594 CPSTRDTHSPTPS 632
PS P PS
Sbjct: 1202 KPSVGVPPVPPPS 1214
Score = 26.6 bits (56), Expect = 4.9
Identities = 27/85 (31%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Frame = +3
Query: 384 SCVSPPRNTQSCSLRLPSTPRPTERG*PRSCSKHSTRPPCTSPSKPCSRCTRP-VVPPVS 560
S +PP S + P P+P G P S PP PS P PPV
Sbjct: 1165 SVAAPPVPAPSSGI--PPVPKPAA-GVP-PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
Query: 561 CWTP-ATVSPTPCPSTRDTHSPTPS 632
TP A + P P P+ + P PS
Sbjct: 1221 --TPSAGLPPVPVPTAKAPPVPAPS 1243
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 33.1 bits (72), Expect = 0.056
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 374 FYNELRVAPEEHPVLLTE--APLNPKANRERMTQIMFETFNTPAM---YVAIQ 517
+Y L E+HP+LLT+ A L P+ + R+ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect(2) = 0.27
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +3
Query: 513 SKPCSRCTRPVVPPVSCWT---PATVSPTPCPSTRDT-HSPTPSCVWT*PV 653
S+ S T P PP + T PA SP P P +T H PT S PV
Sbjct: 899 SRTSSVSTLPPPPPTASMTASAPAIASPPP-PKVGETYHPPTASGTRVPPV 948
Score = 23.8 bits (49), Expect(2) = 0.27
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 399 PRNTQSCSLRLPSTPRPTERG*PRSCSKHSTRPPCTSPSKPCSRCT 536
P+ +Q+ S+ LP+ PR T P + + P P P S T
Sbjct: 814 PKTSQASSI-LPTVPRTTSYTSPYATTSSHITPADVHPLPPPSTST 858
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 30.7 bits (66), Expect = 0.30
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Frame = +3
Query: 360 FGIIPSTMSCVSPPRNTQSCSLRLPSTPR--PTERG*PRSCSKHSTRPPCTSPSKPCSRC 533
+G+ + S SP +T + PS+P PT + +S P SP+ P
Sbjct: 1551 YGLTSPSYSPSSPGYSTSPAYM--PSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSA 1608
Query: 534 TRPVVPPVS-CWTPATVSPTPCPSTRDTHSPT 626
T P P S ++P + S +P T ++SPT
Sbjct: 1609 TSPSYSPTSPSYSPTSPSYSP---TSPSYSPT 1637
Score = 26.6 bits (56), Expect = 4.9
Identities = 26/81 (32%), Positives = 32/81 (39%)
Frame = +3
Query: 384 SCVSPPRNTQSCSLRLPSTPRPTERG*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVSC 563
S +SP S S S T S +S P SP+ P T P P S
Sbjct: 1545 SAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1604
Query: 564 WTPATVSPTPCPSTRDTHSPT 626
AT SP+ P T ++SPT
Sbjct: 1605 SYSAT-SPSYSP-TSPSYSPT 1623
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +3
Query: 519 PCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSP 623
PC+ + PPV+C TP P C + H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.1
Identities = 23/87 (26%), Positives = 30/87 (34%)
Frame = +3
Query: 369 IPSTMSCVSPPRNTQSCSLRLPSTPRPTERG*PRSCSKHSTRPPCTSPSKPCSRCTRPVV 548
IP + PP S R + P PT P S + PP PS P P +
Sbjct: 395 IPGRSAPALPPLGNAS---RTSTPPVPTPPSLPPSAPP--SLPPSAPPSLPMGAPAAPPL 449
Query: 549 PPVSCWTPATVSPTPCPSTRDTHSPTP 629
PP + P + P +P P
Sbjct: 450 PPSAPIAPPLPAGMPAAPPLPPAAPAP 476
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 519 PCSRCTRPVVPPVSCWTPATVSPTPCPST 605
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 495 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 602
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.9
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Frame = +3
Query: 384 SCVSPPRNTQSCSLRLPSTPRPTE-RG*PRSCSKHSTRPPCTSPSKP-----CSRCTRPV 545
S VSPP + Q S P+T P++ P + ++P R P
Sbjct: 163 SMVSPPPSFQPPSAAAPATSLPSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPE 222
Query: 546 VPPVSCWTPATVSPTPCP 599
+PP +TP P P P
Sbjct: 223 IPPT--YTPKQADPLPAP 238
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 281 VPHLLHKSPSVPYRPSRPDGGA 216
+ L+ K+PS PY SRP A
Sbjct: 306 IDQLISKAPSYPYSSSRPSASA 327
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 310 FEGQDTSFALCLISYIRVLLSHTDHHA 230
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 8.5
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 501 CTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPSCVWT 644
C +PS+ C + PV + T S TP P+T + +PTP+ T
Sbjct: 825 CYNPSQ--YGCDNGALGPVQS-SSTTSSITPTPTTTSSITPTPTTTST 869
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,597,883
Number of Sequences: 5004
Number of extensions: 79070
Number of successful extensions: 273
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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