Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_H09
(840 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 172 5e-44
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 172 6e-44
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 1.9
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 27 3.3
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 27 4.4
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 27 4.4
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 26 5.8
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 172 bits (419), Expect = 5e-44
Identities = 79/142 (55%), Positives = 99/142 (69%)
Frame = +3
Query: 372 AFGNMCRGGRMFAPTKPWRRWHRPVNXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 551
AFGNMCR GRMFAPTK WR+WH VN ARGH IE+IPE+
Sbjct: 91 AFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEV 150
Query: 552 PLVVADKVQEINKTKQAVIFLRRLKAWSVILKVYKSQRLRAGKGKMRNRRRIQRKGPLIX 731
PLVV D VQ KTK+AV L+ +KA+ ++KV S++LRAGKGK+RNRR +QR+GPL+
Sbjct: 151 PLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVV 210
Query: 732 FNKDQGLTRAFRNIPGVELLNV 797
FN+D G+ +AFRNIPGVE++NV
Sbjct: 211 FNEDTGIVKAFRNIPGVEIVNV 232
Score = 98.7 bits (235), Expect = 9e-22
Identities = 43/55 (78%), Positives = 49/55 (89%)
Frame = +2
Query: 203 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 367
DLV VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ
Sbjct: 35 DLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQ 89
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 172 bits (418), Expect = 6e-44
Identities = 79/142 (55%), Positives = 99/142 (69%)
Frame = +3
Query: 372 AFGNMCRGGRMFAPTKPWRRWHRPVNXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 551
AFGNMCR GRMFAPTK WR+WH VN ARGH IE+IPE+
Sbjct: 91 AFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEV 150
Query: 552 PLVVADKVQEINKTKQAVIFLRRLKAWSVILKVYKSQRLRAGKGKMRNRRRIQRKGPLIX 731
PLVV D VQ KTK+AV L+ +KA+ ++KV S++LRAGKGK+RNRR +QR+GPL+
Sbjct: 151 PLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVV 210
Query: 732 FNKDQGLTRAFRNIPGVELLNV 797
FN+D G+ +AFRNIPGVE++NV
Sbjct: 211 FNEDAGIVKAFRNIPGVEIVNV 232
Score = 98.7 bits (235), Expect = 9e-22
Identities = 43/55 (78%), Positives = 49/55 (89%)
Frame = +2
Query: 203 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 367
DLV VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ
Sbjct: 35 DLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQ 89
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 379 VTCVVVDVCSPPRS-PGGAGTVPSTS 453
++ + VDV SPP + PG AG+ P T+
Sbjct: 61 ISSLKVDVSSPPSTAPGSAGSTPKTT 86
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 157 APCTVSLISEYTDNKGRATDRLISLL 80
A C V + SEYT N G ++ L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 26.6 bits (56), Expect = 4.4
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -2
Query: 554 GKLGNL--FNNVSSSLNERWDASSSNGCCQG-RSPLSEVDGTVPAP 426
GK GN FN+ +SS + SS G + RSP + DGTV AP
Sbjct: 127 GKYGNAGPFNSDNSSKPLILNNGSSGGTPKNLRSPAIDSDGTVLAP 172
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 17 VAWRMVFITAISVYFGGIA-SLK*RNESIGSPTFIVGVF 130
V W +VF+ ++ GG+A LK +S+ F+V F
Sbjct: 343 VGWGLVFVLICVIWGGGLAFQLKYTRKSVAESDFVVTDF 381
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 5.8
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -2
Query: 551 KLGNLFNNVSSSLNERWDASSSNGCCQGRSPLSEVDGTVPAPPGLRGGEHTSTTT 387
KLG FNN SS+++E + N CQ S L+ + P R + ST+T
Sbjct: 253 KLGYYFNNTSSTISEEF--KKRNKECQYDSVLNRLTFPTEQYPIWRPEYNFSTST 305
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,299,742
Number of Sequences: 5004
Number of extensions: 67261
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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