Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_H08
         (845 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81082-5|CAB03093.2|  429|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical ...    30   1.8  
AF026206-1|AAK39306.1|  260|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z77662-5|CAB01192.2|  579|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>Z81082-5|CAB03093.2|  429|Caenorhabditis elegans Hypothetical
           protein F42G4.2 protein.
          Length = 429

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +2

Query: 509 RVVVPTRADSQNVLPPLITQNIS-LRVC-FLFTFTRCYSLTLKINREHPLLKTYLIRKKN 682
           + +  T   +  VLP L     S L+ C F  TF   + + L  +R+HP+      RKK 
Sbjct: 352 KAIETTATSTMTVLPNLKASETSQLKTCEFGVTFNLKHVICLSYDRKHPIASIRKFRKKM 411

Query: 683 D 685
           D
Sbjct: 412 D 412


>AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical
           protein H32C10.3 protein.
          Length = 783

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 146 PIINKTLYFHYNLFSFCFCCVAVVLFHIFF 57
           P I+K +Y   NL +F F C+ + +FH+F+
Sbjct: 572 PWIHKCVY-RKNLRAFVFFCLTIFMFHVFY 600


>AF026206-1|AAK39306.1|  260|Caenorhabditis elegans Hypothetical
           protein T28B4.2 protein.
          Length = 260

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -1

Query: 212 TNSIKSLVTIQVFLRKKVLTKS-PIINKTLYFHYNLFSFCFCCVAVVLFHIF 60
           T ++ +L TI    R KVL +  P  ++  +  +  F +C C +AV++FH F
Sbjct: 137 TFNVVTLKTIGGDTRTKVLYEDLPDPSELRWLSWMYFRWCRCHIAVIVFHKF 188


>Z77662-5|CAB01192.2|  579|Caenorhabditis elegans Hypothetical
           protein F47B8.5 protein.
          Length = 579

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = -1

Query: 248 FVKSN*REERNRTNSIKSLVTIQVFLRKKVLTKSPIINKTLYFHYNLFSFC-FCCVAVVL 72
           FVK+  +EER      + ++ +++   K  LTK  II + +   ++LFSF  F   +   
Sbjct: 273 FVKTLIKEERFAIFRTEEVIHMRIVFAKIKLTKPAIIFEAICL-FSLFSFFNFITFSTSH 331

Query: 71  FHIFFKRFSFFLMSKNKRKR 12
           FH F  +  F L  +   K+
Sbjct: 332 FH-FHNKIKFLLEGETVYKQ 350


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,285,963
Number of Sequences: 27780
Number of extensions: 410858
Number of successful extensions: 940
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)