Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_H08
         (845 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    24   1.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   1.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   1.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   1.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   4.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   6.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.2  

>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 666 KYVFNNGCSRLIFNV 622
           KY +NN C +L +N+
Sbjct: 97  KYNYNNNCKKLYYNI 111


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 19  LLFLDIKKKLNRLKKIWNNTTATQQKQN 102
           LLF D  K L  + K WN     Q+ QN
Sbjct: 680 LLFKDEAKDLVSVNKSWNKWNDWQETQN 707


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 19  LLFLDIKKKLNRLKKIWNNTTATQQKQN 102
           LLF D  K L  + K WN     Q+ QN
Sbjct: 680 LLFKDEAKDLVSVNKSWNKWNDWQETQN 707


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 19  LLFLDIKKKLNRLKKIWNNTTATQQKQN 102
           LLF D  K L  + K WN     Q+ QN
Sbjct: 680 LLFKDEAKDLVSVNKSWNKWNDWQETQN 707


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 218 NRTNSIKSLVTIQVFLRKK 162
           NRTN+I  LVT++  L ++
Sbjct: 263 NRTNNIFELVTVEPILTER 281


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 697 PAGDIIFFSDQIRF*QWMFTIDFQ 626
           P+G  I  S + R   W+FTI FQ
Sbjct: 359 PSGMKIISSKKDRQELWIFTISFQ 382


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 458 CPTLQTETHYCFPAEIGRVVVPTRADSQNVLPPLITQN 571
           C T+   T     + +  V +   AD + V+PP+I +N
Sbjct: 209 CRTMHRLTRQVVVSSVANVRI---ADHRGVMPPVILEN 243


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 458 CPTLQTETHYCFPAEIGRVVVPTRADSQNVLPPLITQN 571
           C T+   T     + +  V +   AD + V+PP+I +N
Sbjct: 209 CRTMHRLTRQVVVSSVANVRI---ADHRGVMPPVILEN 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,133
Number of Sequences: 438
Number of extensions: 5370
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)