Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_H05
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    28   1.5  
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    27   2.6  
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos...    26   6.1  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   6.1  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    26   6.1  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    26   8.1  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    26   8.1  

>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +2

Query: 50  AIDLLTNDECRLLLEVEDFFN 112
           +I+ +TND+ R++ E+E F+N
Sbjct: 358 SINFVTNDDVRMMREIEQFYN 378


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 183 STRHHRRS*NQVPPNSLTIFCSS*TVNANK 272
           STR   +  N+VP N L I+C    +  NK
Sbjct: 74  STRERLKLYNKVPDNGLVIYCGEVIMEGNK 103


>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 445 LWCCRVNAFNTAAESAGTRDSVAS 516
           LW CR N+F+     A  +DSV+S
Sbjct: 124 LWDCRSNSFSPIQVLADAKDSVSS 147


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = +2

Query: 314  PSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAVELTHLTPPQSPP 493
            P+     S V     P P A++ AS+P + S P  ++   +         T + P Q P 
Sbjct: 895  PAAMSRTSSVSTLPPPPPTASMTASAPAIASPPPPKVGETYHP--PTASGTRVPPVQQPS 952

Query: 494  GP 499
             P
Sbjct: 953  HP 954


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +3

Query: 156 RSKSITPRVSTRH--HRRS*NQVPPNSLTIFCSS*TVNANKRIFSPTG*RKKLTSLRSSK 329
           R  +  PRV+  +  + +  N +  N+     ++ T+N ++R+ +P+G R     L  S 
Sbjct: 529 RGSAFNPRVTRFNVGNEQFSNNIDNNNYNQPYANATMNNSRRLRTPSGERSMRADLSQSP 588

Query: 330 TFLKFLNAWTHNPRQ 374
                LN   H  RQ
Sbjct: 589 ASYDSLNVPKHRRRQ 603


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 293 LEEKVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQPT-EELLREFETV 445
           +E + D+ S   N S +P+      P  V+ SSP   + P+  +++ + +T+
Sbjct: 470 IEPEPDVISTVRNSSTIPQASSSSVPKIVVDSSPVTENPPSHSDVMGQKDTI 521


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 467 ALTRQHHKPFRIPAAVLQWAARSQKDLK-LEPLPGVVGPRVQELQK 333
           A T   H P + P+  +QW  +S +DL+ ++    V+    +E  K
Sbjct: 746 AFTHLGHHPDKTPSEYIQWRFQSGEDLEAMDKASRVISEADEEAMK 791


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,431
Number of Sequences: 5004
Number of extensions: 49484
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)