Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_H04
(916 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0202 + 15131001-15131047,15131488-15131754,15131913-151319... 33 0.32
02_05_0073 - 25602268-25603182,25603273-25604190 32 0.73
08_02_1548 + 27803775-27803972,27804050-27804107,27804724-278048... 31 1.3
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634... 30 2.2
12_02_1017 + 25339515-25339548,25339689-25339837,25339932-253399... 29 5.2
11_02_0059 - 7883980-7884141,7884423-7884467,7884629-7884715,788... 29 5.2
10_07_0061 + 12489552-12489674,12490761-12490836,12490916-124909... 29 5.2
09_06_0015 - 20234231-20234344,20234846-20234902,20234968-202351... 29 5.2
06_03_0206 - 17898551-17900056,17900439-17900564,17902420-17902881 29 5.2
08_02_0411 + 16855255-16855644 29 6.8
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204... 28 9.0
01_06_0487 + 29733380-29733448,29733492-29734373,29734851-297348... 28 9.0
>07_03_0202 +
15131001-15131047,15131488-15131754,15131913-15131940,
15132120-15132179,15132570-15132696,15132907-15133724
Length = 448
Score = 33.1 bits (72), Expect = 0.32
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = +2
Query: 116 KTSQTRAALPSGLKNSRPNRRNEVDPXKLPTSEGAKPVTLPVTALEERPQRSLRLTRERP 295
K+S LP G SRP R VD + P A + P+ A +E Q+ L RP
Sbjct: 89 KSSVLSNGLPIGFGKSRPYHRGRVDTIRSPVHRDALVLGQPI-AYDEEKQQQLEAPPNRP 147
>02_05_0073 - 25602268-25603182,25603273-25604190
Length = 610
Score = 31.9 bits (69), Expect = 0.73
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Frame = +2
Query: 128 TRAALPSGLKNSRPNRRN---EVDPXKLPTSEGA---KPVTLPVTALEERPQRSLRLTRE 289
T A PS ++S P RR+ E+D L + GA K ++ A+ PQ++ ++E
Sbjct: 269 TAAQTPSLSRSSSPYRRSPMAEIDENSLRNNNGANHHKKISENALAIAAAPQKATERSKE 328
Query: 290 RPSIV 304
+P +V
Sbjct: 329 KPKVV 333
>08_02_1548 +
27803775-27803972,27804050-27804107,27804724-27804806,
27804889-27804946,27805398-27805511,27805868-27806057,
27806476-27806546,27806931-27807115
Length = 318
Score = 31.1 bits (67), Expect = 1.3
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +2
Query: 371 AANPTHPTDNPTEEIDPTSSRVKLPRLTEALDRMPGGCVTPLSSRRRGSVEPEPKVVL 544
A+ P PT PT +SSR++ P L AL M L SR + P P+ +L
Sbjct: 5 ASRPPTPTPTPTANAAASSSRIESPSLRAAL-AMALIHYNRLPSRAAAAAAPSPQALL 61
>08_02_0824 +
21561699-21562415,21563294-21563362,21563424-21563459,
21564533-21564600,21565259-21565277,21565662-21565763,
21566173-21566288,21566501-21566595,21568093-21568264,
21568413-21568493,21569732-21569801,21570106-21570132
Length = 523
Score = 30.3 bits (65), Expect = 2.2
Identities = 38/152 (25%), Positives = 57/152 (37%), Gaps = 15/152 (9%)
Frame = +2
Query: 146 SGLKNSRPNRRNEVDPXKLPTSEGA---KPVTLPVTALEERPQRSLRLTRERPSIVTKPX 316
S +S P+RR P +L G +P P + E P + R R P
Sbjct: 12 SSSSSSLPSRRRRRPPPRLGRRRGGDDQQPPHPPKASSEALPCAASPPARCRGGDHQPPH 71
Query: 317 XXXXXXXXXXXAEAEPSLAA----NPTHPTDNPTEEIDPTSSRVKLPR--------LTEA 460
A + P+ +P+HP + +E + +S + R TEA
Sbjct: 72 PPEAALEALRGAASPPARRRGGDLHPSHPPEAASEALRGAASPPERRRGGDRQPSHPTEA 131
Query: 461 LDRMPGGCVTPLSSRRRGSVEPEPKVVLEAVT 556
P G +P + RR G +P P V + AVT
Sbjct: 132 ASEAPSGSASPPARRRGGDQQPPPAVAV-AVT 162
>12_02_1017 +
25339515-25339548,25339689-25339837,25339932-25339990,
25340665-25340742,25341155-25341347,25341424-25341454,
25341534-25341592,25341674-25341747,25342228-25342314,
25342353-25342379,25342522-25342583,25342676-25342704,
25343037-25343129
Length = 324
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 419 PTSSRVKLPRLTEALDRMPGGCVTPLSSRRRGSVEPEPKVVLEAVTLDEM 568
PTS R++LPR T + P R+ G+ P P++ EA +++E+
Sbjct: 39 PTSFRIELPRRTIRAAILNKRHTVPCYQRQEGASSPAPQI--EAKSMEEV 86
>11_02_0059 -
7883980-7884141,7884423-7884467,7884629-7884715,
7885746-7885874,7885995-7886151,7886248-7886350,
7887050-7887103,7887334-7887451,7888549-7888700,
7890166-7891852
Length = 897
Score = 29.1 bits (62), Expect = 5.2
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 395 DNPTEEIDPTSSRVKLPRLTEALDRMPGGCVTPLSSRRRGSVEPEPK 535
+ +EE+DP SR + L+ +PG C T ++ + P P+
Sbjct: 216 EGASEELDPDPSRASIHWLSSPSGEVPGTCSTKCTNEASVNWLPSPR 262
>10_07_0061 +
12489552-12489674,12490761-12490836,12490916-12490980,
12491089-12491166,12492156-12492236,12492813-12492974,
12493328-12493426,12493509-12494797,12495063-12495286,
12495373-12495500,12495596-12495634,12495724-12497178
Length = 1272
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 44 FEITAFLPTKHHR-ILSKSTLLRFQKTSQTRA 136
+E T LPTK+H +L+K ++R + T+A
Sbjct: 766 YECTLILPTKYHADLLAKQLIIRMDREGHTKA 797
>09_06_0015 -
20234231-20234344,20234846-20234902,20234968-20235111,
20235581-20235745,20235817-20236005,20236086-20236326,
20236412-20236512,20236704-20237241,20238101-20238132,
20238677-20238760
Length = 554
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +2
Query: 71 KHHRILSKSTLLRFQKTSQTRAALPSGLKNSRPNRRNEVDPXKLPTSEGAKPVTLP 238
K + L ++ L R ++T+ AAL + R+ +++ +L +S +K +LP
Sbjct: 409 KELKALQEAELRRLEETAAREAALEKQKQEEEERRKKQLEEEELESSLASKQASLP 464
>06_03_0206 - 17898551-17900056,17900439-17900564,17902420-17902881
Length = 697
Score = 29.1 bits (62), Expect = 5.2
Identities = 18/62 (29%), Positives = 26/62 (41%)
Frame = +2
Query: 350 AEAEPSLAANPTHPTDNPTEEIDPTSSRVKLPRLTEALDRMPGGCVTPLSSRRRGSVEPE 529
A AEP++A P + EE + V L A R G +TP S + + P
Sbjct: 25 AAAEPAMAGTPNRGQERGGEEGEEEEKAVLRRGLAAARARRKAGPITPSPSWKLEASPPR 84
Query: 530 PK 535
P+
Sbjct: 85 PE 86
>08_02_0411 + 16855255-16855644
Length = 129
Score = 28.7 bits (61), Expect = 6.8
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +2
Query: 476 GGCVTPLSSRRRGSVEPEPKVVLEAVTLDE 565
GGC L RRRG P+ V EA T DE
Sbjct: 35 GGCGGRLGGRRRGGAGPDLAGVEEAATGDE 64
>04_04_1694 - 35419278-35419565,35419744-35419861,35420404-35420490,
35420909-35420931,35421647-35421843,35421964-35422159,
35422382-35422481,35423288-35423374,35424053-35424282,
35424678-35424763,35425148-35425271,35425415-35428573,
35430014-35430019
Length = 1566
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -1
Query: 556 CHRFEYNLRFGLHRTTSATRQWRNTSSWHAIKCLSKTRELHS 431
C R+ + GLH N SW +KC + ++LHS
Sbjct: 1119 CGRYCKEIFIGLHNHVGIENFLDNELSWSILKCNTDGQKLHS 1160
>01_06_0487 +
29733380-29733448,29733492-29734373,29734851-29734884,
29735177-29735346,29735446-29735784
Length = 497
Score = 28.3 bits (60), Expect = 9.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 353 EAEPSLAANPTHPTDNPTEEI 415
EA P+ A P+HP D+ +EEI
Sbjct: 4 EAPPAKKAKPSHPQDDASEEI 24
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,148,980
Number of Sequences: 37544
Number of extensions: 420019
Number of successful extensions: 1192
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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