Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_H04
(916 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81548-4|CAB04465.1| 916|Caenorhabditis elegans Hypothetical pr... 32 0.50
Z81503-5|CAB04114.1| 916|Caenorhabditis elegans Hypothetical pr... 32 0.50
AF003142-3|AAB54188.1| 739|Caenorhabditis elegans Him-three par... 31 1.5
AF003142-2|AAB54190.1| 412|Caenorhabditis elegans Hypothetical ... 31 1.5
Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical pr... 29 3.5
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z46812-6|CAA86848.2| 546|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z46812-5|CAA86847.2| 775|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z37093-8|CAA85469.2| 546|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z37093-7|CAA85468.2| 775|Caenorhabditis elegans Hypothetical pr... 28 8.1
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 28 8.1
U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical p... 28 8.1
AC006662-1|AAM98008.2| 707|Caenorhabditis elegans Hypothetical ... 28 8.1
>Z81548-4|CAB04465.1| 916|Caenorhabditis elegans Hypothetical
protein F14F7.5 protein.
Length = 916
Score = 32.3 bits (70), Expect = 0.50
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +1
Query: 43 FRDNSIPTDEASQDPLEVDTSKISENVANESSIAIR 150
F D SIP+D+A + L D SK+ E ++ SS+A R
Sbjct: 79 FIDGSIPSDDAIAELLYTDPSKLQEMMSVNSSVANR 114
>Z81503-5|CAB04114.1| 916|Caenorhabditis elegans Hypothetical
protein F14F7.5 protein.
Length = 916
Score = 32.3 bits (70), Expect = 0.50
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +1
Query: 43 FRDNSIPTDEASQDPLEVDTSKISENVANESSIAIR 150
F D SIP+D+A + L D SK+ E ++ SS+A R
Sbjct: 79 FIDGSIPSDDAIAELLYTDPSKLQEMMSVNSSVANR 114
>AF003142-3|AAB54188.1| 739|Caenorhabditis elegans Him-three
paralog protein 3 protein.
Length = 739
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 10 VQEMLINENSDFRDNSIPTDEASQDPLEVDTSKI--SENVANESSIAIRPEE 159
V E +N D NS+ D +Q+ L++D+ I S NES AI PEE
Sbjct: 420 VDEQPEEQNDDDAQNSLQIDSDAQNSLQIDSDAIITSPEKRNESKSAI-PEE 470
>AF003142-2|AAB54190.1| 412|Caenorhabditis elegans Hypothetical
protein F57C9.7 protein.
Length = 412
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +1
Query: 28 NENSDFRDNSIPTDEASQDPLEVDTSKISENVANESSIAIRPEE 159
+EN D+S +DE S D V+T K S A ESS RP+E
Sbjct: 56 SENEYDDDHSSSSDEESDDEYVVETHKSSMVDAAESSEGERPDE 99
>Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical
protein ZK1010.5 protein.
Length = 756
Score = 29.5 bits (63), Expect = 3.5
Identities = 35/124 (28%), Positives = 45/124 (36%), Gaps = 4/124 (3%)
Frame = +2
Query: 116 KTSQTRAALPSGLK----NSRPNRRNEVDPXKLPTSEGAKPVTLPVTALEERPQRSLRLT 283
KTS T A L + +P E + P PV +PV A E P T
Sbjct: 246 KTSTTTPAADEPLNLDGGDPKPATMKESNTTADPVVLTNPPVVVPVLATSEEPND----T 301
Query: 284 RERPSIVTKPXXXXXXXXXXXXAEAEPSLAANPTHPTDNPTEEIDPTSSRVKLPRLTEAL 463
P + P +E + A PT PTD P +DP +S+ P T A
Sbjct: 302 TAAPVMPPNPPVGISGPAT---SEEPNNTTAAPTVPTDLPVVFVDPATSQE--PNDTTAA 356
Query: 464 DRMP 475
MP
Sbjct: 357 PVMP 360
>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
protein F35A5.1 protein.
Length = 1274
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 7/94 (7%)
Frame = +2
Query: 161 SRPNRRNEVDPXKLPTSEGAKPVT-LPVTALEERPQRSLRL-----TRERPSIVTKPXXX 322
++P+ DP P+S+ K PV + P +++ + T P++V KP
Sbjct: 705 TKPDSEAAADPVSGPSSKDPKLAKKAPVKPRDPSPMKAVPIKPAPKTEVPPAVVKKPEPV 764
Query: 323 XXXXXXXXX-AEAEPSLAANPTHPTDNPTEEIDP 421
A+AEP+ P P NP ++ P
Sbjct: 765 AKSRDPSPKKAKAEPNSPVVPPTPVKNPVKKWKP 798
>Z46812-6|CAA86848.2| 546|Caenorhabditis elegans Hypothetical
protein ZK669.1b protein.
Length = 546
Score = 28.3 bits (60), Expect = 8.1
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = +2
Query: 47 EITAFLPTKHHRILSKSTLLRFQKTSQTRAALPSGLKNSRPNRRNEVDPXKLPTSEGAKP 226
E AFL T R S S+L+R ++ A G + RRN ++ P EGA P
Sbjct: 37 EYMAFLQTLPTRAASSSSLVRSDRSIDEGVASCDGSSSLTSLRRNAIN----PDDEGALP 92
Query: 227 VT 232
T
Sbjct: 93 DT 94
>Z46812-5|CAA86847.2| 775|Caenorhabditis elegans Hypothetical
protein ZK669.1a protein.
Length = 775
Score = 28.3 bits (60), Expect = 8.1
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = +2
Query: 47 EITAFLPTKHHRILSKSTLLRFQKTSQTRAALPSGLKNSRPNRRNEVDPXKLPTSEGAKP 226
E AFL T R S S+L+R ++ A G + RRN ++ P EGA P
Sbjct: 266 EYMAFLQTLPTRAASSSSLVRSDRSIDEGVASCDGSSSLTSLRRNAIN----PDDEGALP 321
Query: 227 VT 232
T
Sbjct: 322 DT 323
>Z37093-8|CAA85469.2| 546|Caenorhabditis elegans Hypothetical
protein ZK669.1b protein.
Length = 546
Score = 28.3 bits (60), Expect = 8.1
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = +2
Query: 47 EITAFLPTKHHRILSKSTLLRFQKTSQTRAALPSGLKNSRPNRRNEVDPXKLPTSEGAKP 226
E AFL T R S S+L+R ++ A G + RRN ++ P EGA P
Sbjct: 37 EYMAFLQTLPTRAASSSSLVRSDRSIDEGVASCDGSSSLTSLRRNAIN----PDDEGALP 92
Query: 227 VT 232
T
Sbjct: 93 DT 94
>Z37093-7|CAA85468.2| 775|Caenorhabditis elegans Hypothetical
protein ZK669.1a protein.
Length = 775
Score = 28.3 bits (60), Expect = 8.1
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = +2
Query: 47 EITAFLPTKHHRILSKSTLLRFQKTSQTRAALPSGLKNSRPNRRNEVDPXKLPTSEGAKP 226
E AFL T R S S+L+R ++ A G + RRN ++ P EGA P
Sbjct: 266 EYMAFLQTLPTRAASSSSLVRSDRSIDEGVASCDGSSSLTSLRRNAIN----PDDEGALP 321
Query: 227 VT 232
T
Sbjct: 322 DT 323
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 43 FRDNSIPTDEASQDPLEVDTSKISENVANESSIAIRPEEFTPQPKKRGR 189
F + + T + +P +D S + E + NE I E TP+ RGR
Sbjct: 2847 FPEIELTTSDLFDNPSIIDLSIMIEQLLNEKGITEPSEPNTPKTSLRGR 2895
>U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical
protein C44B7.2a protein.
Length = 597
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = +1
Query: 376 QPNSSYRQPYRRDRSH--QLTSEAPASY 453
+P+ YR+PY DR+H + +AP+SY
Sbjct: 234 KPDDHYRRPYEDDRNHYDRHDYQAPSSY 261
>AC006662-1|AAM98008.2| 707|Caenorhabditis elegans Hypothetical
protein H23L24.3b protein.
Length = 707
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 58 IPTDEASQDPL-EVDTSKISENVANESSIAIRPEEFTPQPKK 180
I T+ S +P+ + TSK+ + S AI+P EF +P K
Sbjct: 5 ISTEFCSDNPVGSISTSKVHPTDLSTPSYAIKPVEFYEEPLK 46
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,868,398
Number of Sequences: 27780
Number of extensions: 321076
Number of successful extensions: 984
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -