Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_H03
         (861 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.90 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   1.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   1.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.8  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   6.3  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   6.3  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   8.4  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 367 LPKALYQMFWQATMELYLPMVKQVLGKHIPWKVS 468
           LPK +    W + MEL+  M       H+ WK S
Sbjct: 76  LPKLMEFDDWTSVMELHSWMTLMWTDSHLSWKPS 109


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 300 VKYTYLTKYSNPMQPKQKVYNEAAKSIVSDVLAGYNGTIFAYGQTSS 440
           V  T+L   S   Q K   Y E  K ++ ++L GY+  I   G+ ++
Sbjct: 10  VLLTFLLHPSRCTQGKVN-YREKEKEVLDNILGGYDARIRPSGENAT 55


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 300 VKYTYLTKYSNPMQPKQKVYNEAAKSIVSDVLAGYNGTIFAYGQTSS 440
           V  T+L   S   Q K   Y E  K ++ ++L GY+  I   G+ ++
Sbjct: 10  VLLTFLLHPSRCTQGKVN-YREKEKEVLDNILGGYDARIRPSGENAT 55


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +2

Query: 374 KHCIRCSGRLQWNYICLWSNKFWENT 451
           ++  RC GR+QW+ + ++  ++   T
Sbjct: 121 RNATRCIGRIQWSKLQVFDCRYVTTT 146


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 707 FXGHDTNRSVAPFTNGTLFLSSWTLRYTXDT 615
           F  +DT R + P    T FL SW +     T
Sbjct: 194 FGFYDTARGMLPDPKKTPFLISWGIAQVVTT 224


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 707 FXGHDTNRSVAPFTNGTLFLSSWTLRYTXDT 615
           F  +DT R + P    T FL SW +     T
Sbjct: 194 FGFYDTARGMLPDPKKTPFLISWGIAQVVTT 224


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 543 FHGXNVIEYVIDNPWY 496
           +HG N++E     PWY
Sbjct: 196 WHGDNMLEPSPKTPWY 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,935
Number of Sequences: 438
Number of extensions: 4270
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)