Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_H02
(852 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 138 1e-33
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 120 2e-28
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 115 1e-26
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 113 2e-26
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 102 6e-23
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 90 3e-19
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 90 3e-19
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 80 3e-16
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 58 2e-09
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 28 1.9
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.9
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 26 7.8
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 138 bits (333), Expect = 1e-33
Identities = 69/99 (69%), Positives = 82/99 (82%)
Frame = +3
Query: 366 GQGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSI 545
G GKTTQIPQ+ V + + L + +ACTQPRRVAAMSVA+RVA+EMDV LG+EVGY+I
Sbjct: 101 GSGKTTQIPQF-VLYDELPHLTNTQ-IACTQPRRVAAMSVAKRVADEMDVDLGEEVGYNI 158
Query: 546 RFEDCSGPQTLLKYMTDGMLLREAMSDPMLEQYRVILLE 662
RFEDCSGP TLLKYMTDGMLLREAM+D ML +Y I+L+
Sbjct: 159 RFEDCSGPNTLLKYMTDGMLLREAMTDHMLSRYSCIILD 197
Score = 74.5 bits (175), Expect = 2e-14
Identities = 33/55 (60%), Positives = 45/55 (81%)
Frame = +1
Query: 661 NEAHERTLATDILMGVLKEVIKQRSDLKLVIMSATLNAGKXXHYFDNAPLMNIPG 825
+EAHERTLATDILMG++K + +R DLK+++MSATL+A K YF +APL+ +PG
Sbjct: 197 DEAHERTLATDILMGLMKRLATRRPDLKIIVMSATLDAKKFQKYFFDAPLLAVPG 251
Score = 31.5 bits (68), Expect = 0.16
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 296 WEYKNDFMRLLNTHQCIVLVGETGSGXDYPDPPVV 400
++ + +F+++ + +Q IV VGETGSG P V
Sbjct: 78 YQQREEFLKIYHENQIIVFVGETGSGKTTQIPQFV 112
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 120 bits (290), Expect = 2e-28
Identities = 59/99 (59%), Positives = 75/99 (75%)
Frame = +3
Query: 366 GQGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSI 545
G GKTTQ+PQ+ E G K + CTQPRRVAAMSVA RVA+EMDV LGQEVGYSI
Sbjct: 444 GSGKTTQLPQFLHEAGYTKG---NKKICCTQPRRVAAMSVAARVAKEMDVRLGQEVGYSI 500
Query: 546 RFEDCSGPQTLLKYMTDGMLLREAMSDPMLEQYRVILLE 662
RFE+ + +T++KY+TDGMLLRE +++P L Y VI+++
Sbjct: 501 RFENATSEKTVIKYLTDGMLLREFLTEPDLASYSVIIID 539
Score = 67.7 bits (158), Expect = 2e-12
Identities = 30/55 (54%), Positives = 42/55 (76%)
Frame = +1
Query: 661 NEAHERTLATDILMGVLKEVIKQRSDLKLVIMSATLNAGKXXHYFDNAPLMNIPG 825
+EAHERTL TDIL G++K++ + R DLK++I SAT++A K YFD AP+ +PG
Sbjct: 539 DEAHERTLHTDILFGLVKDIARFRPDLKVLISSATIDAEKFSAYFDEAPVFYVPG 593
Score = 33.9 bits (74), Expect = 0.029
Identities = 11/26 (42%), Positives = 21/26 (80%)
Frame = +2
Query: 296 WEYKNDFMRLLNTHQCIVLVGETGSG 373
++YK+D ++ +N +Q +++V ETGSG
Sbjct: 421 YQYKDDLLKAINEYQVLLIVAETGSG 446
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 115 bits (276), Expect = 1e-26
Identities = 57/99 (57%), Positives = 73/99 (73%)
Frame = +3
Query: 366 GQGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSI 545
G GKTTQ+ Q+ E G + + CTQPRRVAAMSVA+RV+EEM V LG VGYSI
Sbjct: 518 GSGKTTQLAQFLYE----DGYHRNGMIGCTQPRRVAAMSVAKRVSEEMGVRLGSTVGYSI 573
Query: 546 RFEDCSGPQTLLKYMTDGMLLREAMSDPMLEQYRVILLE 662
RFED +GP T++KYMTDG+LLRE++ LE+Y VI+++
Sbjct: 574 RFEDVTGPDTVIKYMTDGVLLRESLMQNNLEKYSVIIMD 612
Score = 72.9 bits (171), Expect = 5e-14
Identities = 35/66 (53%), Positives = 48/66 (72%), Gaps = 3/66 (4%)
Frame = +1
Query: 637 NNIELYS---SNEAHERTLATDILMGVLKEVIKQRSDLKLVIMSATLNAGKXXHYFDNAP 807
NN+E YS +EAHER+L TDILMG+LK+V+ +R D+KL++ SAT+N+ K +F AP
Sbjct: 601 NNLEKYSVIIMDEAHERSLNTDILMGLLKKVLSRRRDIKLLVTSATMNSQKFSDFFGGAP 660
Query: 808 LMNIPG 825
IPG
Sbjct: 661 QFTIPG 666
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 113 bits (273), Expect = 2e-26
Identities = 57/99 (57%), Positives = 72/99 (72%)
Frame = +3
Query: 366 GQGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSI 545
G GKTTQI Q+ E S +K + CTQPRRVAAMSVA+RVAEE+ +G+EVGY+I
Sbjct: 536 GSGKTTQITQYLAEEGYTSD---SKMIGCTQPRRVAAMSVAKRVAEEVGCRVGEEVGYTI 592
Query: 546 RFEDCSGPQTLLKYMTDGMLLREAMSDPMLEQYRVILLE 662
RFED + T +KYMTDGML RE + DP+L +Y VI+L+
Sbjct: 593 RFEDKTSRMTQIKYMTDGMLQRECLVDPLLSKYSVIILD 631
Score = 66.5 bits (155), Expect = 5e-12
Identities = 29/55 (52%), Positives = 40/55 (72%)
Frame = +1
Query: 661 NEAHERTLATDILMGVLKEVIKQRSDLKLVIMSATLNAGKXXHYFDNAPLMNIPG 825
+EAHERT+ATD+L G+LK + +R DLKL++ SATL+A + YF P+ IPG
Sbjct: 631 DEAHERTVATDVLFGLLKGTVLKRPDLKLIVTSATLDAERFSSYFYKCPIFTIPG 685
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 296 WEYKNDFMRLLNTHQCIVLVGETGSG 373
++ + F+ ++ +Q +VL+GETGSG
Sbjct: 513 FKLRKQFLEAVSKNQILVLLGETGSG 538
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 102 bits (245), Expect = 6e-23
Identities = 51/99 (51%), Positives = 71/99 (71%)
Frame = +3
Query: 366 GQGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSI 545
G GK+TQIPQ+ E + VA TQPRRVAA+++A+RVA E LG++VGYSI
Sbjct: 122 GSGKSTQIPQFLNECP----YAQEGCVAITQPRRVAAVNLAKRVAAEQGCRLGEQVGYSI 177
Query: 546 RFEDCSGPQTLLKYMTDGMLLREAMSDPMLEQYRVILLE 662
RF+D + +T +KY+TDGMLLRE ++DP+L QY ++L+
Sbjct: 178 RFDDTTSKKTRIKYLTDGMLLRELINDPILSQYHTLILD 216
Score = 64.9 bits (151), Expect = 1e-11
Identities = 29/55 (52%), Positives = 42/55 (76%)
Frame = +1
Query: 661 NEAHERTLATDILMGVLKEVIKQRSDLKLVIMSATLNAGKXXHYFDNAPLMNIPG 825
+EAHERTL TD+L+G +K++IK+R L+++IMSATLNA + +FD A + I G
Sbjct: 216 DEAHERTLMTDMLLGFVKKIIKKRPALRVIIMSATLNAERFSEFFDGAEICYISG 270
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 296 WEYKNDFMRLLNTHQCIVLVGETGSG 373
WE + + + ++ IV+VGETGSG
Sbjct: 99 WEAHDTLCQQIQDNRVIVVVGETGSG 124
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 90.2 bits (214), Expect = 3e-19
Identities = 46/99 (46%), Positives = 65/99 (65%)
Frame = +3
Query: 366 GQGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSI 545
G GKTTQIPQ+ E S G + CTQPRR+ A SV++RV+ E++ G GYSI
Sbjct: 51 GCGKTTQIPQFLYEAGWASQNGI---IGCTQPRRLVAKSVSERVSLELNSPPGSLCGYSI 107
Query: 546 RFEDCSGPQTLLKYMTDGMLLREAMSDPMLEQYRVILLE 662
+F+ +T +KYMTDG+LL E DP+LE+Y +++L+
Sbjct: 108 QFDHNVSEKTKIKYMTDGILLNEIFFDPLLERYSIVILD 146
Score = 57.6 bits (133), Expect = 2e-09
Identities = 26/57 (45%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Frame = +1
Query: 661 NEAHERTLATDILMGVLKEVIKQRSDLKLVIMSATLNAGKXXHYF--DNAPLMNIPG 825
+E HERTL+TD+L+GVLK ++++R+D +LV+ SA+++A K +F D M+I G
Sbjct: 146 DEVHERTLSTDLLLGVLKRILEKRNDFRLVLSSASVDANKLSQFFGQDKVCTMSIEG 202
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 90.2 bits (214), Expect = 3e-19
Identities = 46/100 (46%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Frame = +3
Query: 366 GQGKTTQIPQWSVEFAAVSGLGKAKG-VACTQPRRVAAMSVAQRVAEEMDVALGQEVGYS 542
G GKTTQ+PQ+ E S + G +A TQPRRVAA+S+A+RV+EE+ +V Y
Sbjct: 424 GSGKTTQLPQFLFEAGFSSPESENPGMIAITQPRRVAAVSIAKRVSEEL-TGFSSKVSYQ 482
Query: 543 IRFEDCSGPQTLLKYMTDGMLLREAMSDPMLEQYRVILLE 662
IRF+ P T +K+MTDG+LLRE SD +L Y ++++
Sbjct: 483 IRFDSTINPDTAIKFMTDGILLRELSSDFLLTAYSAVIVD 522
Score = 39.9 bits (89), Expect = 4e-04
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 10/64 (15%)
Frame = +1
Query: 661 NEAHERTLATDILMGVLKEVIKQRSD----------LKLVIMSATLNAGKXXHYFDNAPL 810
+EAHER++ TDIL+G+L +++ R + LKL+IMSATL + + +N L
Sbjct: 522 DEAHERSVNTDILLGLLSRIVRLRREMSKSDQKVKPLKLIIMSATL---RVTDFSENKLL 578
Query: 811 MNIP 822
++P
Sbjct: 579 FSVP 582
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 80.2 bits (189), Expect = 3e-16
Identities = 38/82 (46%), Positives = 56/82 (68%)
Frame = +3
Query: 366 GQGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSI 545
G GK+TQ+ Q+ ++ SG + V CTQPRR++A+S+A+RVA E D +G+EVGYS+
Sbjct: 603 GSGKSTQVVQFILDHYLSSGEKDLQTVVCTQPRRISAISLAERVAFERDTTVGKEVGYSV 662
Query: 546 RFEDCSGPQTLLKYMTDGMLLR 611
E +TLL++ T G+LLR
Sbjct: 663 HGEKSISKETLLEFCTTGLLLR 684
Score = 52.4 bits (120), Expect = 8e-08
Identities = 24/55 (43%), Positives = 39/55 (70%)
Frame = +1
Query: 661 NEAHERTLATDILMGVLKEVIKQRSDLKLVIMSATLNAGKXXHYFDNAPLMNIPG 825
+E HER++ DIL+ +LK VI + +LK+++MSAT+N+ +YF NA ++I G
Sbjct: 703 DEVHERSIENDILLTLLKLVISRIPNLKVILMSATVNSDTFKYYFGNAGHLHIHG 757
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 296 WEYKNDFMRLLNTHQCIVLVGETGSG 373
WE + M + Q +V+ GETGSG
Sbjct: 580 WESRRKIMDAIQHSQVVVISGETGSG 605
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 57.6 bits (133), Expect = 2e-09
Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 5/87 (5%)
Frame = +3
Query: 366 GQGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVAEEM----DVALGQE- 530
G GK+TQIP + +E + +G KA + T+PRR++A+S+A RV++E+ A E
Sbjct: 657 GCGKSTQIPAFLLENSTKNG--KAVKIYVTEPRRISAISLANRVSQELGGNPPSARSHEL 714
Query: 531 VGYSIRFEDCSGPQTLLKYMTDGMLLR 611
VGYS+R + P T L Y+T G LR
Sbjct: 715 VGYSVRLDSKCTPLTPLTYVTTGTFLR 741
Score = 55.2 bits (127), Expect = 1e-08
Identities = 25/55 (45%), Positives = 39/55 (70%)
Frame = +1
Query: 661 NEAHERTLATDILMGVLKEVIKQRSDLKLVIMSATLNAGKXXHYFDNAPLMNIPG 825
+E HER++ +D+L+ + ++KQ LK++IMSATLNA K YF+ + L+ IPG
Sbjct: 758 DEVHERSIDSDLLLIHVLHLLKQHPHLKIIIMSATLNAEKFQLYFEGSNLITIPG 812
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +3
Query: 738 FETRYYVSHIKCWKV-PXLF*QCSINEHSW 824
F+ RYY I CWKV L C+ + W
Sbjct: 122 FQRRYYAEIISCWKVLAFLLQACTDADSKW 151
>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 26.2 bits (55), Expect = 5.9
Identities = 16/72 (22%), Positives = 29/72 (40%)
Frame = +3
Query: 480 SVAQRVAEEMDVALGQEVGYSIRFEDCSGPQTLLKYMTDGMLLREAMSDPMLEQYRVILL 659
S +Q+ + + +GQ VG +E + + + M+ +M + Y ILL
Sbjct: 189 SKSQQERSDTSIVIGQLVGLEALYEKYGKDSKIYQVARENMMTLLSMIKQVSSTYTFILL 248
Query: 660 E*SPRKDTCNRY 695
+T RY
Sbjct: 249 PPIDSSETSTRY 260
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 355 YEHYTLMSVE*SHEIIFVFPXQGVLNVFVIAH 260
+E Y + ++ S I F+F V VFV+ H
Sbjct: 573 FESYLVEELDNSKSIFFLFKIYKVFEVFVVPH 604
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,219,922
Number of Sequences: 5004
Number of extensions: 62964
Number of successful extensions: 179
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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