Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_H01
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    27   2.4  
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    27   2.4  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.4  
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    26   5.6  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    26   7.4  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    26   7.4  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   9.7  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   9.7  

>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/70 (22%), Positives = 33/70 (47%)
 Frame = +2

Query: 218 STKMNKQKSKTSLKDSKMEIRRLSNVQKTFLKKTGRQRLNRTITKVFKNLRENKKALSKI 397
           ++K  K+ +K  LK++    ++L+  +K +  K         +     +  +NK+ LSK+
Sbjct: 4   ASKATKKFTKNHLKNTIERRKQLARSKKVYGTKNRNSHTKNKLESGTNDNNKNKEDLSKL 63

Query: 398 SGGTISSNDS 427
                +SN S
Sbjct: 64  YSDVTTSNTS 73


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 692 IYCHIGIRIISLVKLIVSTXKSCVPFALLSSDY 594
           +YCH G+   S + + V+  +  +PF L+ S Y
Sbjct: 117 VYCHHGLMTNSELWVAVNESERSLPFVLIESGY 149


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 768 LSPGTSL-CHLXI*HHRW*MYICCQLNLLSHRNPNN 664
           LSP +S  C L +   +W +  C +LN+ + RNP N
Sbjct: 27  LSPRSSSDCLLDLRDRKWELVCCKELNIGNERNPLN 62


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 512 SIIAFSPNQSKQCSTPKPKSLTGMDMNHNHLTTMRKAH 625
           SI  + P  ++     K  SL  + +NHN+ TT+   H
Sbjct: 248 SIETYGPAGAEMLQKEKEVSLYKLSINHNNKTTLLAVH 285


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 393 LLSAFLFSRKFLNT-FVMVLFNLCLPVFFRKVFWTLDS 283
           L+   L  R  L T FV+  F L   +FF  VFW+  S
Sbjct: 390 LMQGMLRKRNLLLTPFVVPGFMLAAALFFNMVFWSKSS 427


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
 Frame = -1

Query: 435 VHLESFEEIVPPEILLSAFLFSRKFLNTFVMVLFN----LCLPVFFRKVFWTLDSLLISI 268
           ++ E+ EEI   ++     L + +FLN    V+ +    L   V    V WTL S    +
Sbjct: 578 INSETLEEISTVDLPHGGQLENAQFLNAEHCVIISQRRLLVWNVISASVQWTLASKFTGL 637

Query: 267 LESFSDVFDFCLFIF 223
           L S S   DF +  F
Sbjct: 638 LASSSSGNDFAVIDF 652


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 468 VFCCILLFITVVHLESFEEIVPPEILL 388
           +  C++LF   +   S   I+PP ILL
Sbjct: 516 LLACLILFFMTLFSRSSSTILPPSILL 542


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +2

Query: 362 NLRENKKALSKISGGTISSNDSKCTTVINNKIQQKTDSDEMLVISDDEDCSIIAFSPNQS 541
           NLRE  K   K+S  T SS  S    ++N K + +    ++  +  +     I+ S + S
Sbjct: 494 NLREQIKEQKKVSESTQSSLQSLQRDILNEKKKHEVYESQLNELKGELQTE-ISNSEHLS 552

Query: 542 KQCST 556
            Q ST
Sbjct: 553 SQLST 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,153,125
Number of Sequences: 5004
Number of extensions: 64036
Number of successful extensions: 178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)