Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_FL5_G23
(933 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0473 + 3708770-3710026 30 2.3
10_08_0929 + 21633179-21633377,21633466-21633809,21633905-21634297 30 2.3
05_06_0276 + 26878732-26879574,26879920-26880387,26880800-268810... 30 3.0
01_06_0115 + 26585481-26586401,26586501-26586556,26586747-265868... 29 4.0
06_01_0186 + 1454533-1454710,1455299-1455420,1455508-1455806,145... 29 5.3
05_07_0200 - 28368890-28369021,28369169-28369303,28369918-283699... 29 5.3
06_03_0178 + 17594062-17595576 29 7.0
02_02_0299 - 8726024-8726101,8726460-8726534,8726836-8726965,872... 29 7.0
09_04_0749 + 19919367-19920869 28 9.2
03_01_0588 - 4354195-4355184 28 9.2
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993... 28 9.2
>12_01_0473 + 3708770-3710026
Length = 418
Score = 30.3 bits (65), Expect = 2.3
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2
Query: 527 SARLCRTPSVTCPRCAARHTSATARWCVAPVTGTP 423
SA R T P+ AA +A A W VAP T P
Sbjct: 263 SAPKAREQQPTTPQAAAAAAAAAAMWAVAPNTAAP 297
>10_08_0929 + 21633179-21633377,21633466-21633809,21633905-21634297
Length = 311
Score = 30.3 bits (65), Expect = 2.3
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -1
Query: 330 GAAHDPEPEP-RGSAPQPHQYVC 265
GAA D +P P RG+AP P Q +C
Sbjct: 31 GAADDEQPPPRRGAAPPPQQQLC 53
>05_06_0276 +
26878732-26879574,26879920-26880387,26880800-26881021,
26881153-26881278,26881309-26881573,26881719-26881936
Length = 713
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +1
Query: 94 RVKGSPLRLRESSPPRHMHSPLRQSP 171
R +GSP R RE SP SP R+SP
Sbjct: 24 RDRGSPPRRRERSPAARSRSPRRRSP 49
>01_06_0115 +
26585481-26586401,26586501-26586556,26586747-26586876,
26587396-26587506,26587606-26587674,26588125-26588198,
26588446-26588581,26588702-26588795,26588901-26589000,
26589100-26589224,26589597-26589634,26589662-26589742,
26589868-26589972,26590102-26590166,26590371-26590572,
26591073-26591159,26591238-26591294,26591369-26591458,
26591572-26591658,26592204-26592278,26592363-26592463,
26592565-26592655
Length = 964
Score = 29.5 bits (63), Expect = 4.0
Identities = 17/54 (31%), Positives = 21/54 (38%)
Frame = -2
Query: 554 IAGTPIACMSARLCRTPSVTCPRCAARHTSATARWCVAPVTGTPSTDVSRSPAR 393
+AG P A R C V P A+R +A A PV T P+R
Sbjct: 56 VAGIPYAAFGFRWCEEAEVASPAAASRAAAAAAAASRPPVVRTSRGRAQVLPSR 109
>06_01_0186 +
1454533-1454710,1455299-1455420,1455508-1455806,
1455846-1455933,1456015-1456096,1457130-1457242
Length = 293
Score = 29.1 bits (62), Expect = 5.3
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -1
Query: 408 QVPRADQPLRRPARHDVTDSHSAPVFGAAHDPEPEPRGSAP 286
QV A QPL+RP D +D AP + + E G P
Sbjct: 42 QVAAAGQPLKRPRPADFSDVPGAPEMAGYYSRDEERPGYRP 82
>05_07_0200 -
28368890-28369021,28369169-28369303,28369918-28369947,
28370019-28370093,28370222-28370333,28370440-28370621,
28370723-28370854,28372193-28373479
Length = 694
Score = 29.1 bits (62), Expect = 5.3
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = -2
Query: 308 PNPAAPRPSRTSTSASGSVVPPAS 237
P PAA R SRTST A+ S PAS
Sbjct: 346 PPPAAKRTSRTSTPATTSSSAPAS 369
>06_03_0178 + 17594062-17595576
Length = 504
Score = 28.7 bits (61), Expect = 7.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 308 PNPAAPRPSRTSTSASGSVVPPAST 234
P P++P PS S SAS S + A+T
Sbjct: 21 PRPSSPTPSSASASASASALAAAAT 45
>02_02_0299 -
8726024-8726101,8726460-8726534,8726836-8726965,
8727406-8727601,8727894-8727965,8728087-8728159,
8728240-8728344,8728502-8728624,8728730-8728806,
8729064-8729108,8729214-8729433
Length = 397
Score = 28.7 bits (61), Expect = 7.0
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 203 PIPSTCRTTRRSKPVARRTLRQTYWCGWGAEPRGSG 310
P+P C R + P + T GW EPR G
Sbjct: 38 PLPPCCVKARAAAPESEAKCHATVVSGWFTEPRSRG 73
>09_04_0749 + 19919367-19920869
Length = 500
Score = 28.3 bits (60), Expect = 9.2
Identities = 23/58 (39%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -1
Query: 429 HAVH*RQQVP--RADQPLRRPARHDVTDSHSAPVFGAAHDPEPEPRGSAPQPHQYVCL 262
HA R VP AD PLR P D+ P F AAHD P A +Q+V L
Sbjct: 153 HARSGRLPVPVGEADGPLRLPGLPVELDAGDVPTFLAAHDTH-HPSMRALLMNQFVGL 209
>03_01_0588 - 4354195-4355184
Length = 329
Score = 28.3 bits (60), Expect = 9.2
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +2
Query: 224 TTRRSKPVARRTLRQTYWCGWGAEPRG--SGSGSWAAPKTGAE 346
++RR KP R +R+ W W AE R G W T AE
Sbjct: 88 SSRRRKPAQYRGVRRRPWGKWAAEIRDPVKGIRVWLGTFTNAE 130
>01_07_0122 -
41196081-41196205,41197561-41198245,41198961-41199329,
41199405-41199514,41200539-41200833
Length = 527
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = -1
Query: 366 HDVTDS-HSAPVFGAAHDPEPEPRGSAPQP 280
H DS HSAP H P EPR AP P
Sbjct: 361 HGHEDSRHSAPAQAPVHYPVHEPRYGAPPP 390
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.130 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,230,897
Number of Sequences: 37544
Number of extensions: 338115
Number of successful extensions: 1717
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1715
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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