Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_G22
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    38   0.002
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    33   0.072
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    26   8.2  

>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = +2

Query: 329 IQGNEIEIPQGKHIYNFTCTLPPVLPSSFEGEHGYVRYTVKVTLDR 466
           ++G  +  P G++ YNF   +P   P S E + G+VRY ++ T++R
Sbjct: 264 LRGYSVFAP-GEYTYNFDLAIPNCFPESVEAKMGWVRYFLEATVER 308


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 32.7 bits (71), Expect = 0.072
 Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
 Frame = +2

Query: 359 GKHIYNFTCTLPPVLPSSFEGEHGYVRYTVKVTLDRPWKFDQET--KMAFTVINALDLNL 532
           G+++YNF   +    P S + + G V Y ++  +DR   F  ++  ++   +I +   + 
Sbjct: 191 GEYVYNFELPISCTYPESIQTDMGRVYYFLETLVDRSSTFSGKSTGRIPIELIRS-PCST 249

Query: 533 NPSYKEPIHIQLEKTFCCFCCASPPLXVDVQAPVSGYCPGQVIPLKIDIENKSNVXLHLV 712
           + +  EPI +   K++         L  +VQ        GQV+P+         V  H +
Sbjct: 250 SVATSEPILV--SKSW------EDRLHYEVQVGEKCVVMGQVVPVNFKFTLLGEVKFHKL 301

Query: 713 KIFL 724
           ++FL
Sbjct: 302 RLFL 305


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -1

Query: 157 QKHIRSFHSLFVLHNMYSIDYPNRY 83
           +KH+++ HSL++    Y +D P+ +
Sbjct: 224 KKHMKASHSLYIPEREYLVDEPSLF 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,390,781
Number of Sequences: 5004
Number of extensions: 73835
Number of successful extensions: 180
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)