Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_FL5_G22
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    24   2.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   3.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.7  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   8.6  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   8.6  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   8.6  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   8.6  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   8.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   8.6  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 6/17 (35%), Positives = 15/17 (88%)
 Frame = +2

Query: 647 PGQVIPLKIDIENKSNV 697
           PG+++PL+ D+ N++++
Sbjct: 55  PGKLVPLQCDLSNQNDI 71


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 197 RVKLIPNCMKANRRKMLKAKQNQLILCIQEMKNI 298
           R K +P C  +N+R   +      IL    MKN+
Sbjct: 73  RFKSLPRCQLSNKRDRSRELIKAAILANDFMKNL 106


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 253 KTESTDTMHTGNEE 294
           KTE+ D++H GN E
Sbjct: 23  KTEAFDSLHAGNAE 36


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 262 STDTMHTGNEEYFQISYY 315
           S  T+H  N  Y ++ YY
Sbjct: 86  SNKTIHNNNNNYKKLQYY 103


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 262 STDTMHTGNEEYFQISYY 315
           S  T+H  N  Y ++ YY
Sbjct: 86  SNKTIHNNNNNYKKLQYY 103


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 262 STDTMHTGNEEYFQISYY 315
           S  T+H  N  Y ++ YY
Sbjct: 86  SNKTIHNNNNNYKKLQYY 103


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 262 STDTMHTGNEEYFQISYY 315
           S  T+H  N  Y ++ YY
Sbjct: 86  SNKTIHNNNNNYKKLQYY 103


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 262 STDTMHTGNEEYFQISYY 315
           S  T+H  N  Y ++ YY
Sbjct: 319 SNKTIHNNNNNYKKLQYY 336


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
            ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 662  VLLDLDSNQIQEPAHPL 612
            V L+LDS+   EP HP+
Sbjct: 979  VSLNLDSDLPVEPTHPI 995


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,202
Number of Sequences: 438
Number of extensions: 5445
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)